PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G145300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 864aa    MW: 94007.4 Da    PI: 6.8793
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G145300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.7e-23164265199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   
  Sevir.8G145300.1.p 164 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL-- 251
                         99*****************************7333.34459************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         +  ++el+v+v+r+
  Sevir.8G145300.1.p 252 RGVNGELRVGVRRA 265
                         4489999****996 PP
2Auxin_resp105.75.5e-35290372183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++ +GmRfkm+fe+e+++e+r++Gt+vg  d d+  Wp+SkWr Lk
  Sevir.8G145300.1.p 290 AWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYMESLKRNYPIGMRFKMRFEGEEAPEQRFTGTIVGNVDPDQAGWPESKWRYLK 372
                         89******************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-42156279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-40157293IPR015300DNA-binding pseudobarrel domain
CDDcd100174.14E-21162264No hitNo description
SMARTSM010192.6E-23164266IPR003340B3 DNA binding domain
PfamPF023623.9E-21164265IPR003340B3 DNA binding domain
PROSITE profilePS5086311.519164266IPR003340B3 DNA binding domain
PfamPF065071.5E-32290372IPR010525Auxin response factor
PfamPF023095.9E-12734823IPR033389AUX/IAA domain
PROSITE profilePS5174521.208738820IPR000270PB1 domain
SuperFamilySSF542773.19E-11739814No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MAPPAAAAAA AAHAAGGGSG GGGGGGGEGD GAAAARGGGG FGGGGGGGAE DGMYTELWNL  60
CAGPLVTVPR VGDKVYYFPQ GHIEQVEAST NQVAEQHMQL YNLPWKILCE VMNVELKAEP  120
DTDEVYAQLT LLPESKQPDE NGSSEQEMPA APSAAPARPR VHSFCKTLTA SDTSTHGGFS  180
VLRRHADECL PPLDMSRQPP TQELVAKDLH GAEWRFRHIF RGQPRRHLLQ SGWSVFVSAK  240
RLVAGDAFIF LRGVNGELRV GVRRAMRQQA NVPSSVISSH SMHLGVLATA WHAVNTGTMF  300
TVYYKPRTSP AEFVVPCDRY MESLKRNYPI GMRFKMRFEG EEAPEQRFTG TIVGNVDPDQ  360
AGWPESKWRY LKVRWDEASS IPRPERVSPW QIEPAVSPPP INPLPVHRPK RPRSNAVASL  420
PDSSAPTKEA APKVTVEAQQ NALQRVLQTQ DNATPKSAFG DKSELDAAQQ SVLRPSGFDR  480
EKSTIGTQRK LGSDSWMQMS RPESYNEMLS GLSGYQQPKD LQNQQGFCSL PDQIAAGRPN  540
FWHTVNAHYQ DQQGNHNMFG SWSMMPSSTG FGLNRQNYPM IQEVGAMPQS SANTKFGNGV  600
YTPLPGRGID QYSAGWFGHM VPGSRMDDAQ PRVIKPQPLV LAHGDAQKMK GNSCKLFGIH  660
LDSPAKSEPL KSPPSVANDG MPQTPAAAEW RRVDTTEVEK SSDPPKTPKQ LDAPQADPVP  720
CPQSSRSTQC KSQGGSTRSC KKVHKQGIAL GRSVDLTKFK GYTELVSELD EMFDFNGELK  780
GSNKEWMVVY TDNEGDMMLV GDDPWDEFCN MVHKIFIYTT EEVQRMNPGT LNSGSEDSPA  840
NSMERGSAVR ETLPASSLNS GNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-174423948354Auxin response factor 1
4ldw_A1e-174423948354Auxin response factor 1
4ldw_B1e-174423948354Auxin response factor 1
4ldx_A1e-174423948354Auxin response factor 1
4ldx_B1e-174423948354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G145300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684732.10.0auxin response factor 23 isoform X1
RefseqXP_022684733.10.0auxin response factor 23 isoform X1
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLK3ZHD60.0K3ZHD6_SETIT; Auxin response factor
STRINGSi025988m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2