PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G133300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 21339 Da PI: 11.5733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 19 | 69 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ grWvAeI+d +r r +lg+f+taeeAa+a+++a+ +l+ge Sevir.8G133300.1.p 19 RFVGVRQRP-LGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAAHALRGE 69 589******.8*********....4456**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-27 | 19 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-14 | 19 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.81E-25 | 19 | 76 | No hit | No description |
SMART | SM00380 | 2.5E-30 | 19 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.257 | 19 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-19 | 20 | 76 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-8 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGATKESGGR AATACRGRRF VGVRQRPLGR WVAEIKDSAQ RVRLWLGTFD TAEEAARAYD 60 EAAHALRGES TRTNFAGRAR YCGGGGGAAR ARLSKNLQHV MARVAAAGRA TACAGVGEQF 120 ALAAVFRRCQ QPAAAAPAPP QTPQQAEAAR AAKHAVHPSF VVPRRTAAAP PPSSSALGAG 180 DPWGADDAAE LLRVQERSFN LSSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 6 | 75 | 2 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G133300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661124.1 | 1e-139 | dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A368S7C4 | 1e-141 | A0A368S7C4_SETIT; Uncharacterized protein | ||||
STRING | Si027288m | 1e-137 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-17 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G133300.1.p |