PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G133000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 264aa    MW: 28950.8 Da    PI: 9.4744
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G133000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.82.2e-36161432128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrF Ptdee+vv+yL++++ +++++   vi++v+i++++PwdL    +++++e yfFs+r  k + g++ nra+ +g Wk+tgkd ++
  Sevir.8G133000.2.p  16 QPGFRFTPTDEEIVVHYLRPRAVNEPIPS-AVIADVQIMNHNPWDLL---TEGSSERYFFSQRVLKWPLGDQWNRAAGNGHWKTTGKDMPI 102
                         69**************************9.89**************6...457789*********************************** PP

                 NAM  93 lsk...kgel....vglkktLvfykgrapkgektdWvmheyrl 128
                         +s+   +       +glk+tLvf+ g++  ge+t+W m+ey+l
  Sevir.8G133000.2.p 103 FSStviG--GvplmIGLKRTLVFHLGKSDIGENTEWAMQEYSL 143
                         **75542..04577***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-408153IPR003441NAC domain
PROSITE profilePS5100541.34615194IPR003441NAC domain
PfamPF023653.8E-2117143IPR003441NAC domain
SuperFamilySSF1019411.44E-40182194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAFSLRIASA ASIQHQPGFR FTPTDEEIVV HYLRPRAVNE PIPSAVIADV QIMNHNPWDL  60
LTEGSSERYF FSQRVLKWPL GDQWNRAAGN GHWKTTGKDM PIFSSTVIGG VPLMIGLKRT  120
LVFHLGKSDI GENTEWAMQE YSLAGASLTP YHVMRPSTIF TKKNDSPSEA LSSVKVPVMV  180
YPDKSWVVCR MYKKRKHTPG AVANVYSTAE GGQVPFYNFL AQGNSIGTAS SSSRTNISLE  240
GAKDGEEVRE GSNVKANTSE VGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-3191959169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G133000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703650.21e-157NAC transcription factor NAM-1
TrEMBLK3ZJK60.0K3ZJK6_SETIT; Uncharacterized protein
STRINGSi026759m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-39NAC domain containing protein 32