PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G133000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 266aa    MW: 29223.1 Da    PI: 9.2253
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G133000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.82.2e-36181452128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrF Ptdee+vv+yL++++ +++++   vi++v+i++++PwdL    +++++e yfFs+r  k + g++ nra+ +g Wk+tgkd ++
  Sevir.8G133000.1.p  18 QPGFRFTPTDEEIVVHYLRPRAVNEPIPS-AVIADVQIMNHNPWDLL---TEGSSERYFFSQRVLKWPLGDQWNRAAGNGHWKTTGKDMPI 104
                         69**************************9.89**************6...457789*********************************** PP

                 NAM  93 lsk...kgel....vglkktLvfykgrapkgektdWvmheyrl 128
                         +s+   +       +glk+tLvf+ g++  ge+t+W m+ey+l
  Sevir.8G133000.1.p 105 FSStviG--GvplmIGLKRTLVFHLGKSDIGENTEWAMQEYSL 145
                         **75542..04577***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-416155IPR003441NAC domain
PROSITE profilePS5100541.34617196IPR003441NAC domain
PfamPF023653.9E-2119145IPR003441NAC domain
SuperFamilySSF1019417.59E-41184196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKLIDNFTQA SAASIQHQPG FRFTPTDEEI VVHYLRPRAV NEPIPSAVIA DVQIMNHNPW  60
DLLTEGSSER YFFSQRVLKW PLGDQWNRAA GNGHWKTTGK DMPIFSSTVI GGVPLMIGLK  120
RTLVFHLGKS DIGENTEWAM QEYSLAGASL TPYHVMRPST IFTKKNDSPS EALSSVKVPV  180
MVYPDKSWVV CRMYKKRKHT PGAVANVYST AEGGQVPFYN FLAQGNSIGT ASSSSRTNIS  240
LEGAKDGEEV REGSNVKANT SEVGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-3191977169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G133000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703650.21e-152NAC transcription factor NAM-1
TrEMBLA0A368S7690.0A0A368S769_SETIT; Uncharacterized protein
STRINGSi026759m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-39NAC domain containing protein 32