PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G100900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 270aa    MW: 28310.2 Da    PI: 6.3629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G100900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.5e-17103152355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + GVr ++ +g+++AeIrd + +g  +r++lg+f+t+e Aa a+++a+ + +g
  Sevir.8G100900.1.p 103 FIGVRKRP-WGKFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFSARG 152
                         67******.**********43343..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.219102160IPR001471AP2/ERF domain
SMARTSM003804.1E-28102166IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-20103161IPR016177DNA-binding domain
CDDcd000182.89E-12103137No hitNo description
PRINTSPR003672.0E-8103114IPR001471AP2/ERF domain
PfamPF008471.9E-12103152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-27103160IPR001471AP2/ERF domain
PRINTSPR003672.0E-8126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEQGNHTSSG SYSYYSAAAP AASLPFDAAD GTDDMLLQLD SFLLGTNAID AEDSSYWLSS  60
SPSSSSDAGA LSVSCSTSTS ELHRRSDADA DASPGEKRQA TAFIGVRKRP WGKFAAEIRD  120
STRRGARVWL GTFDTPEAAA LAYDQAAFSA RGAAAVLNFS VERVRDSLAA LALAGGAGTG  180
GGSPVLALKQ RHSKRTRRRK LSHVSSNGKN PKPQRQPARQ SSDVSSASSC TAMAAPEKQG  240
VAHCGVVELE DLGTDFLDEL LRVSSELEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-231031621574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G100900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979115.10.0ethylene-responsive transcription factor ERF094
TrEMBLA0A368S6160.0A0A368S616_SETIT; Uncharacterized protein
STRINGSi027485m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-35ethylene response factor 1