PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G100600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 23507.7 Da PI: 11.3461 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52 | 1.8e-16 | 57 | 106 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GV+ ++ +g+++AeIrd + k +r++lg+f+t+e Aa a+++a+ + +g Sevir.8G100600.1.p 57 FIGVSKRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAYDQAAFSARG 106 67******.**********32..2.24***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.956 | 56 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-29 | 56 | 120 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-12 | 57 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-7 | 57 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-27 | 57 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-20 | 57 | 116 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.0E-7 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MFLGLAGGRN AGGDMLSRVG EASSASSSDV EMVSATMSSE QLWQKASTAV KRRPESFIGV 60 SKRPWGKFAA EIRDSTRKGA RVWLGTFDTP EAAALAYDQA AFSARGAAAV LNFPVERVWE 120 SLGPLALAGS AGAGSSVLAL KRRHSKRTRR SKLSPTSKSL KTQRQPAMVH FSGLSGASGM 180 DMAASAARGG IAVSLLRHGG ARGPRLGADY LEELLRVSSE LHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-24 | 56 | 116 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G100600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727683 | 5e-87 | KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685222.1 | 2e-88 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A2T7CMG4 | 7e-60 | A0A2T7CMG4_9POAL; Uncharacterized protein | ||||
STRING | TRIUR3_29784-P1 | 1e-43 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-29 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G100600.1.p |