PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G090500.8.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 308aa    MW: 36160.9 Da    PI: 9.2758
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G090500.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11621.1e-50101225117
                CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                         k+rwlk++e+++iL n+e + ++++l+++p+sgs++L+nr+++ryfr+DG++w+kk +gk+v+E+he+LKv+++e+l+cyYa++++nptfq
  Sevir.8G090500.8.p  10 KTRWLKPQEVLQILRNHELFMISHKLPQKPPSGSWFLINRRVLRYFRNDGFEWQKKENGKSVNETHERLKVDNMEALNCYYARGDKNPTFQ 100
                         79***************************************************************************************** PP

                CG-1  96 rrcywlLeeelekivlvhylev 117
                         rr+yw+L+ ++e+ivl hy++v
  Sevir.8G090500.8.p 101 RRIYWMLDPAYEHIVLLHYRDV 122
                         ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143765.7612128IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-579123IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4610122IPR005559CG-1 DNA-binding domain
SuperFamilySSF525401.51E-5260306IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.7260282IPR000048IQ motif, EF-hand binding site
PfamPF006120.17262281IPR000048IQ motif, EF-hand binding site
SMARTSM000151.9283305IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.498284307IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055285304IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MHKLQQVVMK TRWLKPQEVL QILRNHELFM ISHKLPQKPP SGSWFLINRR VLRYFRNDGF  60
EWQKKENGKS VNETHERLKV DNMEALNCYY ARGDKNPTFQ RRIYWMLDPA YEHIVLLHYR  120
DVPEGSSFSE TARNDSFTLN QNSSTPTRAE LCSSSGWTSE TPLPFPRSAY EVSPRTANIN  180
NERKSTSGSH LIQHKKIFEK QLSLEDQEDS DVTDKEVENL PDDIFNELEF SRDHTKETGT  240
QPCHNSCLSI HEAFAVSHGV LEKSALSIQK NFRCWKRQKE FLKLRKYAIK IQAQVRANQE  300
RKKYMEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G090500.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816190.11e-111calmodulin-binding transcription activator 4-like isoform X1
RefseqXP_025816192.11e-111calmodulin-binding transcription activator 4-like isoform X2
TrEMBLA0A3L6SKI11e-111A0A3L6SKI1_PANMI; Calmodulin-binding transcription activator 4-like
STRINGPavir.Ea03904.1.p1e-109(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.12e-51Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains