PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G090500.6.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 312aa    MW: 36577.4 Da    PI: 9.0919
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G090500.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11621.1e-50141265117
                CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                         k+rwlk++e+++iL n+e + ++++l+++p+sgs++L+nr+++ryfr+DG++w+kk +gk+v+E+he+LKv+++e+l+cyYa++++nptfq
  Sevir.8G090500.6.p  14 KTRWLKPQEVLQILRNHELFMISHKLPQKPPSGSWFLINRRVLRYFRNDGFEWQKKENGKSVNETHERLKVDNMEALNCYYARGDKNPTFQ 104
                         79***************************************************************************************** PP

                CG-1  96 rrcywlLeeelekivlvhylev 117
                         rr+yw+L+ ++e+ivl hy++v
  Sevir.8G090500.6.p 105 RRIYWMLDPAYEHIVLLHYRDV 126
                         ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143765.7616132IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-5713127IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4614126IPR005559CG-1 DNA-binding domain
SuperFamilySSF525401.51E-5264310IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.7264286IPR000048IQ motif, EF-hand binding site
PfamPF006120.17266285IPR000048IQ motif, EF-hand binding site
SMARTSM000151.9287309IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.498288311IPR000048IQ motif, EF-hand binding site
PfamPF006120.0056289308IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGLDMHKLQQ VVMKTRWLKP QEVLQILRNH ELFMISHKLP QKPPSGSWFL INRRVLRYFR  60
NDGFEWQKKE NGKSVNETHE RLKVDNMEAL NCYYARGDKN PTFQRRIYWM LDPAYEHIVL  120
LHYRDVPEGS SFSETARNDS FTLNQNSSTP TRAELCSSSG WTSETPLPFP RSAYEVSPRT  180
ANINNERKST SGSHLIQHKK IFEKQLSLED QEDSDVTDKE VENLPDDIFN ELEFSRDHTK  240
ETGTQPCHNS CLSIHEAFAV SHGVLEKSAL SIQKNFRCWK RQKEFLKLRK YAIKIQAQVR  300
ANQERKKYME L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G090500.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816190.11e-113calmodulin-binding transcription activator 4-like isoform X1
RefseqXP_025816192.11e-114calmodulin-binding transcription activator 4-like isoform X2
TrEMBLA0A3L6SKI11e-113A0A3L6SKI1_PANMI; Calmodulin-binding transcription activator 4-like
STRINGPavir.Ea03904.1.p1e-111(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.12e-51Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains