PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G087600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 222aa    MW: 24914 Da    PI: 4.6776
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G087600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC772.6e-2431132299
               NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkr.rtlkksdiaaavtrtdi 88 
                         l  fw k    ie++ +f nh lP++ + ki++ ++   mis+e+P  l+k  e+fi eltlr+w+ a++ +r +t+  sdi +a+++ + 
  Sevir.8G087600.1.p  31 LDEFWRKTvedIENTMNFDNHILPMSYVAKIIRDNQGSLMISSETPSCLTKVLEIFIQELTLRAWMCAKSHDRsSTILESDIYEAINSKES 121
                         6789*987667999********************************************************999459*************** PP

               NF-YC  89 fdflvdivprd 99 
                         + fl d+  r 
  Sevir.8G087600.1.p 122 YVFLNDVLQRL 132
                         ******98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.52E-1850137IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-1753130IPR009072Histone-fold
PfamPF008088.1E-1053115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSNGSKERFG HPEELHGLPP TPLTSLQQKE LDEFWRKTVE DIENTMNFDN HILPMSYVAK  60
IIRDNQGSLM ISSETPSCLT KVLEIFIQEL TLRAWMCAKS HDRSSTILES DIYEAINSKE  120
SYVFLNDVLQ RLETNHTQAS MSSNAPQLHQ VHMESHFLAA TSTLKENGAM DPLTKPRDQA  180
FQIPKDNLVP AINAQPDPLE LKNDEDLTMS TTSSGSIEEA K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G087600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450581.14e-57uncharacterized protein LOC8071541
TrEMBLK3ZJT51e-158K3ZJT5_SETIT; Uncharacterized protein
STRINGSi026839m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17894510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-20nuclear factor Y, subunit C2