PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.8G074700.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 826aa MW: 90404.1 Da PI: 6.213

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G074700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	534	584	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l+kyF++++kdA+k+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Sevir.8G074700.2.p 534 EKNISLSVLQKYFAGSLKDASKSLGVCPTTLKRICRQHGISRWPSRKIKKV 584 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.745	519	604	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-25	536	584	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-21	722	814	No hit	No description
SMART	SM00666	1.1E-18	728	810	IPR000270	PB1 domain
PROSITE profile	PS51745	21.472	728	810	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.6E-21	728	810	No hit	No description
Pfam	PF00564	2.8E-14	728	809	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence Send to blast
MDGIGTSVCG AGSPPDMDSF TLSDFDGLER YTDLGAGISV DDSVLSALCS SLSSEEQAEA 60 GASISEDGDS PDGSASGEVM HMCTATLPKS IHGAAITLPE RMLRALAMLK DASSGSGAIL 120 AQVWMPVRYG ERQVLTTSDQ PFLLDQRLTG YREISRKFIF SASEGPEQFP GLPGRVFISC 180 MPEWTSNVMY YHDSEYLRVD HAARHEVRGS LAVPVIDSSG PSDSCCAVLE VVMTQEKDNF 240 MSEIDSISKA LQSVNLSTVK AWTYPQNLTR NQESAFTEIS DVLQTVCHAH MLPLALVWVP 300 FCSSSNANVS IEYGDQDMKF NLRKKDLLCI HESACYANDM RMHYFVRACG DHPLERGQGV 360 AGNVILSNSP FFSCDVKDYD VCDYPLAHHA RKFGLQAAVA IRLRSTYTGS DDYVLEYFLP 420 LMCKGCDEQQ RLLDDIAETM QRACKSLRTV SNSELMADTT VKPSNKKGCR IRFPSSDMSI 480 NSGHKLNVIS TIKANVLSGH QKMNTNELLG DMKRAKKLKP STTSHGEKTS TSMEKNISLS 540 VLQKYFAGSL KDASKSLGVC PTTLKRICRQ HGISRWPSRK IKKVNRSLEK IQNVISSVHG 600 VVDRELKYDP ATGFLISSIS PSGNPLLIDV EGDGVDPPHI ESESSQLKIK LDCGASQGEY 660 QGQLVLKAQE EKLSEIDFSL NEGRLSLNSH SSGTSNSKTD YSSGSASSHG TFQKCSKTQA 720 SANEGNTTVT VKANYKDDAV RFKLLPSMKH HDLLEEIAKR MKLSVGSFHL KYRDDEDDWV 780 ILESDADLQE CLDILEITRS HVLKVQVRDV THPAASSGSS SVLGM*

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence Send to blast

MDGIGTSVCG AGSPPDMDSF TLSDFDGLER YTDLGAGISV DDSVLSALCS SLSSEEQAEA  60
GASISEDGDS PDGSASGEVM HMCTATLPKS IHGAAITLPE RMLRALAMLK DASSGSGAIL  120
AQVWMPVRYG ERQVLTTSDQ PFLLDQRLTG YREISRKFIF SASEGPEQFP GLPGRVFISC  180
MPEWTSNVMY YHDSEYLRVD HAARHEVRGS LAVPVIDSSG PSDSCCAVLE VVMTQEKDNF  240
MSEIDSISKA LQSVNLSTVK AWTYPQNLTR NQESAFTEIS DVLQTVCHAH MLPLALVWVP  300
FCSSSNANVS IEYGDQDMKF NLRKKDLLCI HESACYANDM RMHYFVRACG DHPLERGQGV  360
AGNVILSNSP FFSCDVKDYD VCDYPLAHHA RKFGLQAAVA IRLRSTYTGS DDYVLEYFLP  420
LMCKGCDEQQ RLLDDIAETM QRACKSLRTV SNSELMADTT VKPSNKKGCR IRFPSSDMSI  480
NSGHKLNVIS TIKANVLSGH QKMNTNELLG DMKRAKKLKP STTSHGEKTS TSMEKNISLS  540
VLQKYFAGSL KDASKSLGVC PTTLKRICRQ HGISRWPSRK IKKVNRSLEK IQNVISSVHG  600
VVDRELKYDP ATGFLISSIS PSGNPLLIDV EGDGVDPPHI ESESSQLKIK LDCGASQGEY  660
QGQLVLKAQE EKLSEIDFSL NEGRLSLNSH SSGTSNSKTD YSSGSASSHG TFQKCSKTQA  720
SANEGNTTVT VKANYKDDAV RFKLLPSMKH HDLLEEIAKR MKLSVGSFHL KYRDDEDDWV  780
ILESDADLQE CLDILEITRS HVLKVQVRDV THPAASSGSS SVLGM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G074700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978948.1	0.0	protein NLP2 isoform X1
TrEMBL	K3ZHC2	0.0	K3ZHC2_SETIT; Uncharacterized protein
STRING	Si025974m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-175	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.8G074700.2.p