PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G055200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 23777.8 Da PI: 9.0878 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69 | 1.3e-21 | 11 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk.......sgyWk 84 pp ++F+Ptde++v +yL +++ g +++ ++++ + d +++ Pw+L ++ +a++++ +fF + + ++ +g r+ r+++ g W+ Sevir.8G055200.1.p 11 PPAYKFDPTDEDIVAHYLLPRAIGFPNPYAHAVIDDDPCSCPPWELLrRHGHAGSDHAFFFGPPSDRAVNGVRACRVVRpgpeggaGGLWR 101 899***********************9998999999**********734555566799******************8555555555899*9 PP NAM 85 atgk.dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++ + +l ++ L++y+ +p+ ++ Wvmhey+l Sevir.8G055200.1.p 102 GHDAkEADLVVVrrgggaQLQLRYRRRNLAYYHDGDPN--SSGWVMHEYQL 150 54431333333235765555558999******777777..8********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-30 | 6 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.646 | 10 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-15 | 11 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEASRFGFDF PPAYKFDPTD EDIVAHYLLP RAIGFPNPYA HAVIDDDPCS CPPWELLRRH 60 GHAGSDHAFF FGPPSDRAVN GVRACRVVRP GPEGGAGGLW RGHDAKEADL VVVRRGGGAQ 120 LQLRYRRRNL AYYHDGDPNS SGWVMHEYQL LHPKLLPGPV LLRIRITAKA KKKQQLATRA 180 KKQQHAAAAD QQPIPGPEQP GPSNYPGDAP SPEISS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 173 | AKAKKKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G055200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980219.1 | 1e-157 | NAC domain-containing protein 18 | ||||
TrEMBL | K3ZML8 | 1e-154 | K3ZML8_SETIT; Uncharacterized protein | ||||
STRING | Si027836m | 1e-155 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14301 | 19 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 5e-13 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G055200.1.p |