PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.8G048000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 434aa MW: 45856.3 Da PI: 8.9367

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G048000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	202	225	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+dCg++F ++L+ H t H Sevir.8G048000.1.p 202 FPCTDCGEVFGKAESLELHKATrH 225 89*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.806	202	226	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	204	225	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.19E-18	228	432	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.7E-11	229	431	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MPCPPPMDAG RSSQGKKTMS RGAGKKSSSS XSSWVARSMG FYPSSSSGNR AQPAAAVPAV 60 TEGKNSDNDK ISKKKRSVSI SRSMACASSI CSTKESSVLS RDRSGGRSAS SRSLRAPDVD 120 VDAVYAASAA AVSATSSFNS EATAATSSSA TTVTSASSPL SSALSSPVSS FGSSFRGMPI 180 RKLSGCYECH SVFDPRSFAA AFPCTDCGEV FGKAESLELH KATRHAVSDL GPEDTSRNIV 240 EIIFQSSWLR KQAPVCKIDR ILKVQNSDRT VKRFEQYKES IKERASGEEG KKNARCVADG 300 NELLRFHCTT FTCSLGAGGG TALCQAPATQ CKLCAIIRDG FRVDGDGRIA TMATSGRAHD 360 MAQGISDGEK KAMLVCRVVA GRVKKASDTK PSEDYDCDSV SPSSEGVYSD LDELFVFNRR 420 AILPCFVVIY SGY*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MPCPPPMDAG RSSQGKKTMS RGAGKKSSSS XSSWVARSMG FYPSSSSGNR AQPAAAVPAV  60
TEGKNSDNDK ISKKKRSVSI SRSMACASSI CSTKESSVLS RDRSGGRSAS SRSLRAPDVD  120
VDAVYAASAA AVSATSSFNS EATAATSSSA TTVTSASSPL SSALSSPVSS FGSSFRGMPI  180
RKLSGCYECH SVFDPRSFAA AFPCTDCGEV FGKAESLELH KATRHAVSDL GPEDTSRNIV  240
EIIFQSSWLR KQAPVCKIDR ILKVQNSDRT VKRFEQYKES IKERASGEEG KKNARCVADG  300
NELLRFHCTT FTCSLGAGGG TALCQAPATQ CKLCAIIRDG FRVDGDGRIA TMATSGRAHD  360
MAQGISDGEK KAMLVCRVVA GRVKKASDTK PSEDYDCDSV SPSSEGVYSD LDELFVFNRR  420
AILPCFVVIY SGY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G048000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978793.1	0.0	uncharacterized protein LOC101758746
TrEMBL	A0A368S483	0.0	A0A368S483_SETIT; Uncharacterized protein
STRING	Si026443m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	6e-87	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Sevir.8G048000.1.p