PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G046100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 291aa MW: 29710.7 Da PI: 8.7712 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.6e-20 | 107 | 156 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a++ ++g Sevir.8G046100.1.p 107 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALGFRG 156 7********.**********7.....337**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.291 | 107 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-33 | 107 | 166 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 107 | 170 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 107 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 107 | 166 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.2E-12 | 108 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.23E-13 | 115 | 166 | No hit | No description |
PRINTS | PR00367 | 6.2E-12 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MLSGYERSRE AAVMVDALAR VVAGGAPPAG ARQVVSPAGA WPGYDYDALS PSYSAQAHEY 60 GAALATPPQH SPAAAAAASP GSSQQIPSPS SADTSAGRSG GGAPRRRYRG VRQRPWGKWA 120 AEIRDPHKAA RVWLGTFDTA EAAARAYDEA ALGFRGSRAK LNFPESATLR PPSAPQVGAV 180 PPPPPQRPEA LLESQALAAG AGGGEYSEYA RFLQGAGEPP RFFEPTAPAA TGSSSFPVFF 240 SFGGGDGASH HPWPPASTGT SNSGAGHPPP PATWADSGWW PAPPRDPSAG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-22 | 106 | 164 | 4 | 63 | ATERF1 |
3gcc_A | 9e-22 | 106 | 164 | 4 | 63 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G046100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003286 | 3e-64 | AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08. | |||
GenBank | AP014957 | 3e-64 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 3e-64 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980201.3 | 1e-115 | uncharacterized protein LOC101771844 | ||||
TrEMBL | K3ZJF6 | 1e-114 | K3ZJF6_SETIT; Uncharacterized protein | ||||
STRING | Si026709m | 1e-115 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9894 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 1e-15 | related to AP2 6 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G046100.1.p |