PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.8G035400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 32020.7 Da PI: 6.2527 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.2 | 2.2e-42 | 17 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWka 85 lppG+rF Pt+eel+++yL+++++g++ ++e++i+ vdiy+++P++L++ + + ++++w+fF++r++++ +g r+ r+t sgyWka Sevir.8G035400.1.p 17 LPPGYRFYPTEEELLSFYLRHRLAGTRPQVEHFIPVVDIYSYHPSELQAmagvA--NvgDKEQWFFFCPRAERELHGGRPARTTPSGYWKA 105 79****************************999**************9535532..1335669**************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ v+s+ ++++g k+t+vfy+grap+g+kt+W m+ey++ Sevir.8G035400.1.p 106 TGSPSYVYSApANRVIGEKRTMVFYEGRAPTGNKTRWKMNEYKA 149 *********988899***************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-47 | 12 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.08 | 17 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-22 | 18 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MLLQRTMGSG SSSDPPLPPG YRFYPTEEEL LSFYLRHRLA GTRPQVEHFI PVVDIYSYHP 60 SELQAMAGVA NVGDKEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS YVYSAPANRV 120 IGEKRTMVFY EGRAPTGNKT RWKMNEYKAA DDDRIAAADG APPPLAAGAP VRLRNEFSVC 180 RVYISTGTLR SFDRRPLNPA GGVDQALHCY QQQQVLAPPA AAAAAASQMP AVGVVANGQA 240 AENSHDSTSS ESRGVVVDGA EEDSGATAID WESLADLRFS VVDDLSRVIN WPSN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-27 | 17 | 183 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 1e-27 | 17 | 183 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 1e-27 | 17 | 183 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 1e-27 | 17 | 183 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 1e-27 | 17 | 183 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 1e-27 | 17 | 183 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 1e-27 | 17 | 183 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 1e-27 | 17 | 183 | 20 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.8G035400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978711.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-64 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | K3ZJF4 | 0.0 | K3ZJF4_SETIT; Uncharacterized protein | ||||
STRING | Si026707m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-63 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.8G035400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|