PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G026200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 343aa    MW: 37754 Da    PI: 6.4016
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G026200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.95.4e-12591822125
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratksgyW 83 
                         ppG+rF Pt  el+ +yL++ v++        e e ++  +d+y+++P +L +   ++ +++ +wyf + ++ k  + g+r +ra + g+ 
  Sevir.8G026200.1.p  59 PPGYRFAPTPLELILCYLNPWVTSPAgqtpfGEPEGIVCAADVYSADPGTLTSglrHFGHGDGNWYFLCVARWKDGNaGTRMSRARRPGR- 148
                         9********************99877665642223467788**********853556666888******999998866999999866443. PP

                 NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125
                               ++v +  ge+   +   +f + r p g k+ W+m+e
  Sevir.8G026200.1.p 149 ------RHVAR-LGEADRRRPPRTF-EYRVPGGGKSAWLMEE 182
                         ......33433.2222222222222.2457777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-1749205IPR003441NAC domain
PROSITE profilePS5100518.0358205IPR003441NAC domain
PfamPF023651.4E-759182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEFYTCSRVA QGRILAHLGV GPRSPDAIPS STESNSGSRT RGWRFEQERM EQAPWPGAPP  60
GYRFAPTPLE LILCYLNPWV TSPAGQTPFG EPEGIVCAAD VYSADPGTLT SGLRHFGHGD  120
GNWYFLCVAR WKDGNAGTRM SRARRPGRRH VARLGEADRR RPPRTFEYRV PGGGKSAWLM  180
EEIGSSMPDA TGGDGVKVLC RVHRTPRAAA DDDANEERQE TDEVVQLRSS KKRRCELRQE  240
HDFAAAGYWA AAAPTDVGCS YASTSQTALV NAAAPTTWQQ QPMMEQGVAS YHCTGVNGGV  300
YVKDEQQPLE VLLPDEGWQQ FVEIGYGFDY STEDGLFKKN FQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G026200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978357.11e-174NAC domain-containing protein 26
TrEMBLA0A368S1U20.0A0A368S1U2_SETIT; Uncharacterized protein
STRINGSi012013m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834