PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.8G018500.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 291aa MW: 30320 Da PI: 8.5874

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G018500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.6	2.4e-37	36	95	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+al+cprC+stntkfCyynnys++qPry+CkaCrryWtkGG+lrnvPvGg +rknk++ Sevir.8G018500.1.p 36 QEQALNCPRCHSTNTKFCYYNNYSVTQPRYLCKACRRYWTKGGTLRNVPVGGRCRKNKQQ 95 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	34	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	38	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.192	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGRKEEAAIP PPAAARNVKK AKQQQAGGER MPRPQQEQAL NCPRCHSTNT KFCYYNNYSV 60 TQPRYLCKAC RRYWTKGGTL RNVPVGGRCR KNKQQNPSAP SALASSSDSK KIMNSSTQQL 120 LMMMPPPPPT AANLSNVLPT TFMSATGVGG GFELPSSDHH PLPFAPLSLP SNPGTTPPAS 180 SFLDLLPFLP TPSSFGAMML QHGPGMIAGA GGGLQQQWLP SSQHGNDDGG LFAAGGSPAA 240 AAVQEPQQQQ EEEVGGGDGG TAADAAGNDD MGGGGASADI INIYWSSSRI *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G018500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF117793	1e-54	EF117793.2 Setaria italica clone GB-SIM-002 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684319.1	1e-154	dof zinc finger protein PBF-like
Swissprot	O24463	3e-42	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	K3Y8X7	1e-153	K3Y8X7_SETIT; Uncharacterized protein
STRING	Si010669m	1e-154	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Sevir.8G018500.1.p

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]