PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G327000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 503aa    MW: 55021.6 Da    PI: 7.5339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G327000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.44.8e-106454882374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         + lL++cA  v++g + +a+++L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al ++++s  +     aa++ ++++ P++
  Sevir.7G327000.1.p  45 IGLLYQCAAEVAAGAFDRANHCLEQITQLASLDApHTLQRLAAVFADALARKLLNLVPGLSRALLSTANS-GEAHLIPAARRHLFDMLPFM 134
                         679*******************************99**************************99877776.345555578888******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         k+++lt+N+aIlea+ege+ vH++D++  + +++QW+aL++a+  R++gpp+lR+T+v++     ke l +++  La+ Ae++++pf+f+ 
  Sevir.7G327000.1.p 135 KLAYLTTNHAILEAMEGEKYVHVVDLSgpAANPVQWIALFHAFRGRRGGPPHLRVTAVHD----GKEFLANMAGVLAREAEAFDIPFQFSS 221
                         **************************866899****************************....9************************** PP

                GRAS 181 lvakrledleleeL....rvkpgEalaVnlvlqlhrll..................................................... 214
                          v+ rl+dl++++L    rv++gEalaV++v qlhrll                                                     
  Sevir.7G327000.1.p 222 -VEARLDDLDPDALrqllRVRSGEALAVSVVAQLHRLLaaddaasrrhvpgsscltpvqimarsspssfgellerelntrlqlspdassvv 311
                         .799*****9988766668999********************************************************************* PP

                GRAS 215 ..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres....eerikvErellg 291
                                   +  ++ + +  ++L++v+ l Pk++vv+e ea+hn++sFlerf eal+yy++lfd+le   ++++    +er++vEr +lg
  Sevir.7G327000.1.p 312 sslspqspvvQAAQQRPAKLGRFLQAVRALCPKIMVVAEPEANHNAASFLERFEEALNYYASLFDCLERASAAHHrqhaSERAWVERLVLG 402
                         *******998555555556788*********************************************6654444345689*********** PP

                GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                         +e++ vva egaer+erhe+l++W +r+e+aG++ v +s+  +++a+ ll+  ++ g y+v ++   ++++++W+++pL+svSaWr
  Sevir.7G327000.1.p 403 EEVRGVVAREGAERKERHERLAQWGRRMEAAGMERVGMSYGGMMEARKLLQSLGWGGsYEVVHDarGDAFFFCWHRKPLYSVSAWR 488
                         ******************************************************55559999554367788**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.32918465IPR005202Transcription factor GRAS
PfamPF035141.7E-10345488IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDIFPEDTVS SATSSPASSL YSPSPHGYGS WVQELSHDQQ GVRLIGLLYQ CAAEVAAGAF  60
DRANHCLEQI TQLASLDAPH TLQRLAAVFA DALARKLLNL VPGLSRALLS TANSGEAHLI  120
PAARRHLFDM LPFMKLAYLT TNHAILEAME GEKYVHVVDL SGPAANPVQW IALFHAFRGR  180
RGGPPHLRVT AVHDGKEFLA NMAGVLAREA EAFDIPFQFS SVEARLDDLD PDALRQLLRV  240
RSGEALAVSV VAQLHRLLAA DDAASRRHVP GSSCLTPVQI MARSSPSSFG ELLERELNTR  300
LQLSPDASSV VSSLSPQSPV VQAAQQRPAK LGRFLQAVRA LCPKIMVVAE PEANHNAASF  360
LERFEEALNY YASLFDCLER ASAAHHRQHA SERAWVERLV LGEEVRGVVA REGAERKERH  420
ERLAQWGRRM EAAGMERVGM SYGGMMEARK LLQSLGWGGS YEVVHDARGD AFFFCWHRKP  480
LYSVSAWRPA ACRHGAGRLV GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-31324897380Protein SCARECROW
5b3h_A3e-31324896379Protein SCARECROW
5b3h_D3e-31324896379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G327000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750390.0EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0scarecrow-like protein 3
TrEMBLK3Y6U20.0K3Y6U2_SETIT; Uncharacterized protein
STRINGSi009933m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-97scarecrow-like 3