PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G325800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 333aa    MW: 36244.1 Da    PI: 4.9818
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G325800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.45.9e-19101362126
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknr.atksgy 82 
                         ppG+rF Pt  el+ +yL++ v++        ++e ++  +d+y+++P +L +   ++ +++ +wyf + ++ k  + g+r +r +   g+
  Sevir.7G325800.1.p  10 PPGYRFAPTPRELILYYLNPWVASPAgqtpfGQTEGIVCAADVYSADPGTLTSglrHFGHDDGNWYFLCVARWKDGNaGTRMSRaVQGGGT 100
                         9********************99887776753444567888**********853545555777******9999988769*****4455899 PP

                 NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                         W+ +gk  +v +      g ++t+ +     p g k+ W+m+e 
  Sevir.7G325800.1.p 101 WHGSGKRIPVGR-----HGYRQTFEYR---VPGGGKSAWLMEEI 136
                         *****9888877.....79*****995...9999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-234158IPR003441NAC domain
PROSITE profilePS5100523.0179158IPR003441NAC domain
PfamPF023658.3E-1410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEQAPCPGAP PGYRFAPTPR ELILYYLNPW VASPAGQTPF GQTEGIVCAA DVYSADPGTL  60
TSGLRHFGHD DGNWYFLCVA RWKDGNAGTR MSRAVQGGGT WHGSGKRIPV GRHGYRQTFE  120
YRVPGGGKSA WLMEEIGSSL PEATGGEGVK VLCRVHRTPR AAADDDANEE RQETDEVVQF  180
RSSKKPRCEL RQEHDFAAAN YWAAAAPTDV GCSYASTSQT ALVNAAAPTT WQQQPMMEQG  240
VASYHCTGVN GGVYVKDEQQ PLEVLLPDEG WQQCLEIDYG FDYSTEDGLF KKNSTGDAQL  300
NDELMHNIFS CPKPSDGAVR ENGDPRGEKR AS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G325800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978357.10.0NAC domain-containing protein 26
TrEMBLA0A368S1U20.0A0A368S1U2_SETIT; Uncharacterized protein
STRINGSi012013m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-14NAC 007