PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G307400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 817aa    MW: 93498.4 Da    PI: 5.2304
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G307400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.62.4e-2496182290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+
  Sevir.7G307400.1.p  96 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELV 182
                         7*****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2296182IPR004330FAR1 DNA binding domain
PfamPF105513.8E-27294388IPR018289MULE transposase domain
PROSITE profilePS509669.545576612IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-4578605IPR007527Zinc finger, SWIM-type
SMARTSM005754.4E-5587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MQGTSIAIEI DGEAICLDSV GDDEQEAQEN GEMQQIIYGA ENGEQVAFDN QEQGREEDPA  60
GNEEDREHTS IIPSCEELTE ELRNKVAYSE EEAYRLYCDY GHRMGFSVRK GKQYYFTGTK  120
TIRTKDYYCS KEGLKDDEQL TEANFNKPET RTNCKAMVRF RVDSEGQWRV IQIIPEHNHE  180
LVRPEEIHLL RSVRTLSVPK PGVLNAMVNA EIQAMHDSLH INEDGTECHS QLSIRSYTLL  240
EPEDCEALVG YFKRRTNGQG MFYWDVEVDQ EGRMTNFFWR DGRSRVDYDS FGDVVMFDAS  300
HRTNKYNMIC ATFIGVNHHR QNVMFGCAFL SDESPTSYEW LFKSFLLSMG GRPPKTIFTG  360
QNESISKAIE DVLPGTRHCL CQRFIEKNLQ SHLGTINDSG TFHSMLSKCM RECESEAEFD  420
EAWAMMHHEY NMQEHQWLSD LYQQRHKWCT ALHKDAFDGG IESLDRSEGS NDVLSSIDDE  480
STSLATFVHE LDKIVGSWRE NESLEDIQCN QAAPECTVEH SSVLQHAAEF YTHKIYKSLE  540
TDFLDGCGAT SYQEVQCDET LYRFEFILQR SGPKVWVVFL NTSTMDLSCS CKKFETMGVL  600
CSHALNALGL KNVDRIPERY ILKRWTKYAR KGTYPFPVDG FAEQDRSHAL VYRNRAMRFV  660
YDLLMKSKSH QNTRKLILDV LESGEKSLES VCELKRLHMH PLGKEKDGSR VEKRKKKSTK  720
QEKHPRNVKQ AVLPQPAGSV FVDPPNQDQY YAAEDIASNS SIGRPIFYQG YPATGVSTSQ  780
IQGHTNMQTV PQCASQEYSE YAAVQPPSQF GGERNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G307400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0690660.0BT069066.1 Zea mays full-length cDNA clone ZM_BFb0161A09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977332.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLK3Y5820.0K3Y582_SETIT; Uncharacterized protein
STRINGSi009370m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-83FAR1-related sequence 5