PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G299300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 478aa    MW: 52205.4 Da    PI: 6.502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G299300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.2e-07234255223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++Cgk F+r  nL+ H+r H
  Sevir.7G299300.1.p 234 FCSICGKGFKRDANLRMHMRGH 255
                         6*******************98 PP
2zf-C2H210.60.0017352366620
                         TTEEESSHHHHHHHH CS
             zf-C2H2   6 CgksFsrksnLkrHi 20 
                         Cg+sF+rk+ L  H 
  Sevir.7G299300.1.p 352 CGTSFTRKDKLFAHV 366
                         **************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-5231258No hitNo description
SMARTSM003550.0023233255IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.092233260IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5234259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SMARTSM0035571282315IPR015880Zinc finger, C2H2-like
SMARTSM0035537320342IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDHSQNHIHG QSAANFCYQF GSDNPFLGMG VQQPFASFTS PFGATPSTNI PHMDWNPATM  60
LDNLTFIEEK IRQVKDVIRT MVDDGGQRPG ELAQQQQVVN ADLTCLIVQL ISTAGSLLPS  120
LKNSTFLSHP QAGHMGIVNH VGSSSSFVPN VTTISEENKE EMCGPEDYEE LFKGFTDGAL  180
EGGIEIGNVL VEEQDAKDGD EGGDVGMDGE SLPPGSYELL QLEKDEILAP HTHFCSICGK  240
GFKRDANLRM HMRGHGDEYK SPAALAKPPR NASAEHELVR RYSCPFVGCK RNKLHKNFQP  300
LKTILCVKNH YKRSHCEKSY TCSRCHTKKF SVMADLKTHE KHCGRDKWLC SCGTSFTRKD  360
KLFAHVALFQ GHTPALPTEE PKTSSDQISR VGSHQEPAKL PSSMGSSFVW GTSSGNENAL  420
DIKGVDGCSD DFLSTANFGS FNFSFGPADG FTGEPSGSSF SMLPSEHFQS AQKKGKN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G299300.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977257.10.0zinc finger protein STAR3
SwissprotQ943I61e-145STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLK3Y7090.0K3Y709_SETIT; Uncharacterized protein
STRINGSi010000m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-135C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]