PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G286200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NF-YC

Protein Properties

Length: 431aa MW: 47316.4 Da PI: 5.5076

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G286200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	71.8	1.1e-22	23	123	2	99
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ++ fw k+ ie +df +h++P+ r+kk++ a++ m+ ++P +l+k ce+f+ el++r+w+ a++++r + sdia+av++ + + Sevir.7G286200.1.p 23 IREFWRKKqeeIEAIEDFSKHAIPMRRLKKVISANKGKIMMRFDTPSFLTKVCEIFVQELSFRAWMCAHSQDRGVILDSDIADAVASIEPY 113 6899876779999************************************************************************ PP NF-YC 90 dflvdivprd 99 df+ ++ p+d Sevir.7G286200.1.p 114 DFFNNVLPTD 123 **999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00125	2.8E-7	9	106	IPR007125	Histone H2A/H2B/H3
SuperFamily	SSF47113	1.69E-12	45	121	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.1E-13	46	121	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MDHAIDIHAS SKKPALESKQ QMIREFWRKK QEEIEAIEDF SKHAIPMRRL KKVISANKGK 60 IMMRFDTPSF LTKVCEIFVQ ELSFRAWMCA HSQDRGVILD SDIADAVASI EPYDFFNNVL 120 PTDLEEYNSS LRSKPIKKHH HLLIDKPSTP THLPSDQYQM PQFIPQSVGH STYVHISPPL 180 SPKTGCRVPL SLTCVPQEPY PLMPTTITPA PIVSGRMVFL RNNISNNVDI LGVTTPLPVP 240 PSAQPNIPNN RYISTIASTS SDCVGYANTS NVVTQDGGSS ALQCSSPSPI ANNSGPIATC 300 LNHMKPEVAQ IKNDIHAHGT DGIDPEATTG VNDGQNQHGS LDAEVSTIAN VSGYSSNINW 360 DEVDMADDSL LIEFWEDIFM NKDPAPSPTA TSTTDHVPFP CDMPKLEGFG HELYLLDDIV 420 SSASTSRRLS *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MDHAIDIHAS SKKPALESKQ QMIREFWRKK QEEIEAIEDF SKHAIPMRRL KKVISANKGK  60
IMMRFDTPSF LTKVCEIFVQ ELSFRAWMCA HSQDRGVILD SDIADAVASI EPYDFFNNVL  120
PTDLEEYNSS LRSKPIKKHH HLLIDKPSTP THLPSDQYQM PQFIPQSVGH STYVHISPPL  180
SPKTGCRVPL SLTCVPQEPY PLMPTTITPA PIVSGRMVFL RNNISNNVDI LGVTTPLPVP  240
PSAQPNIPNN RYISTIASTS SDCVGYANTS NVVTQDGGSS ALQCSSPSPI ANNSGPIATC  300
LNHMKPEVAQ IKNDIHAHGT DGIDPEATTG VNDGQNQHGS LDAEVSTIAN VSGYSSNINW  360
DEVDMADDSL LIEFWEDIFM NKDPAPSPTA TSTTDHVPFP CDMPKLEGFG HELYLLDDIV  420
SSASTSRRLS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	50	RKKQEEIEAIEDFSKHAIPMRRLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G286200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684300.1	0.0	uncharacterized protein LOC111257969
TrEMBL	K3YD33	0.0	K3YD33_SETIT; Uncharacterized protein
STRING	Si012136m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9174	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	7e-20	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Sevir.7G286200.1.p