PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G274200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 240aa    MW: 26074.1 Da    PI: 10.1194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G274200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.9e-1762111255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  Sevir.7G274200.1.p  62 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 111
                         69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3061120IPR001471AP2/ERF domain
PROSITE profilePS5103222.58962119IPR001471AP2/ERF domain
PfamPF008472.6E-1062111IPR001471AP2/ERF domain
CDDcd000181.00E-2562120No hitNo description
SMARTSM003807.9E-3662125IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2162121IPR016177DNA-binding domain
PRINTSPR003676.2E-126374IPR001471AP2/ERF domain
PRINTSPR003676.2E-12101121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQGEYRSSSE ESAAAAAAAA AAAAMAPLAA AAAAAVKMEE QAAAMAAAQA PAPHQQMQPR  60
RQYRGVRMRK WGKWVAEIRE PHKRTRIWLG SYATPVAAAR AYDTAVFYLR GRSARLNFPD  120
EIPALAMAEG GGEPARGGDP DGGTLSAASI RKKAIEVGSR VDALQTGMMV APPHHRERQR  180
HHHHHHGHHL PQLQLHADEE EHRQQQEQKQ QQQQRAAWSG RAKNPDLNRA PSPESSDAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1461122466ATERF1
3gcc_A4e-1461122466ATERF1
5wx9_A7e-14621211474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G274200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669061e-162EU966906.1 Zea mays clone 298090 dehydration responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826193.11e-100ethylene-responsive transcription factor RAP2-10-like
SwissprotO221747e-47ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A2S3IAZ35e-99A0A2S3IAZ3_9POAL; Uncharacterized protein
STRINGPavir.J27349.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-44DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]