PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G231400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 316aa    MW: 34095.5 Da    PI: 6.3437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G231400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161564148
                        TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd  lv+ ++++Gg+  +W+  ++  g++R++k+c++rw +yl
  Sevir.7G231400.1.p 15 KGPWTEEEDRALVEHIQRHGGHvgSWRNLPKAAGLNRCGKSCRLRWTNYL 64
                        79**********************************************97 PP
2Myb_DNA-binding54.92e-1770114147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T +E+ l++ ++++lG++ W+tIa ++  gRt++++k++w+++
  Sevir.7G231400.1.p  70 RGNFTDDEERLIIALHAELGNK-WSTIATHLD-GRTDNEIKNYWNTH 114
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-23767IPR009057Homeodomain-like
PROSITE profilePS5129417.2651064IPR017930Myb domain
SuperFamilySSF466891.02E-2812111IPR009057Homeodomain-like
SMARTSM007176.7E-121466IPR001005SANT/Myb domain
PfamPF002491.7E-141564IPR001005SANT/Myb domain
CDDcd001673.49E-101764No hitNo description
PROSITE profilePS5129427.40365119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2668119IPR009057Homeodomain-like
SMARTSM007177.6E-1669117IPR001005SANT/Myb domain
PfamPF002494.1E-1570114IPR001005SANT/Myb domain
CDDcd001674.06E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI QRHGGHVGSW RNLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFTDDEERL IIALHAELGN KWSTIATHLD GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHQ RLPPDDILAS AAGAPGLSEA LLSAAASLGG LNNVLMQVQA LQLLLQTING  180
GAAAAGLMAN NNFGSAADNN AMLNARSMVP NFQDQMNLLA HANYRPADDY LNNIASFSEH  240
DAVQQLKAAS SAPAPTAAAL AVPASFPQEV AAAADRPVQG FADLLSEANE MPSMCSLEDD  300
RFWKDMLAES SSLPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-281511927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G231400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794320.0HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976658.10.0transcription factor MYB41
SwissprotQ9S9Z22e-68MYB93_ARATH; Transcription factor MYB93
TrEMBLK3YEJ50.0K3YEJ5_SETIT; Uncharacterized protein
STRINGSi012660m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-70myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]