PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G224700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 453aa MW: 49797.9 Da PI: 8.4626 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++a +q+G W++I +++g +t+ q++s+ qk+ Sevir.7G224700.1.p 59 REKWTEDEHKLFLEALQQHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 103 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.64E-14 | 53 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.775 | 54 | 108 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.4E-15 | 57 | 106 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-12 | 58 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-9 | 59 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-14 | 59 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.46E-10 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MARFQEIKAR NDQRPSADRV GHGNFMDHLK NTLNSGAMDL PEGARAPKAR KPYTISKLRE 60 KWTEDEHKLF LEALQQHGRA WRRIQEHIGS KTAVQIRSHA QKFFSKVIRE SSGDSNSIAA 120 PPQIQIPPPR PKRKPSHPYP RKLGNSLRKD ASTIKQLEKP LLKIQPLFEQ ENCSPKSVLT 180 TAQIGSEILA LEGSGSPASS VYMEEKCLTP STSVGELGVQ VARSKDATTS DGAACGMPEG 240 PVLRLFGKRV VVNNLHQQQN SNTGDLQHVA DMELDTSAET PTSGTGKFSS HGAEEAKTWS 300 PWLTGTQQLM YYLPQGEVLS VHSACQFLSY GNGSISYRVL NPQTVTSDKQ QHQPSEAADC 360 KFTRAEGSWT ESITTSNNVP ETAPQNSDSI ESTQVNNNED EVIPVPGSRK YSTVPAYLRG 420 FVPYKKCAAQ SKMLQSWVPG EEADGEMTRL CL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G224700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976600.1 | 0.0 | myb-like protein J | ||||
TrEMBL | K3Y786 | 0.0 | K3Y786_SETIT; Uncharacterized protein | ||||
STRING | Si010077m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 5e-38 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G224700.1.p |