PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G222800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 410aa    MW: 43584.5 Da    PI: 5.4844
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G222800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.81.2e-29100200195
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g
  Sevir.7G222800.1.p 100 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGaG 190
                         89***************************955556888************************************************85545 PP

                         S.SEE..EEE CS
                  B3  87 r.sefelvvk 95 
                         +  + +l++ 
  Sevir.7G222800.1.p 191 DaARDRLFID 200
                         5555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-4191210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-2897188IPR015300DNA-binding pseudobarrel domain
CDDcd100173.33E-2598185No hitNo description
PfamPF023627.3E-27100204IPR003340B3 DNA binding domain
SMARTSM010191.9E-20100205IPR003340B3 DNA binding domain
PROSITE profilePS5086313.775100205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEFASSSSRF SKEEDEEEEQ EPEEEEEDEE ASPREIPFMT AAAAASSTGG GAASSSSSPT  60
AAASASASGS AALRSSDGAG ASGSGGGGDD VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ  120
HAEKYFPLDA AANEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG  180
DTVSFCRGAG DAARDRLFID WKRRADSRDP HRMPRLPLPM APVASPYGPW GGGAGGFFMP  240
PAPPATLYEH HRFRQGLDFR NINAAAPARQ LLFFGSAGMP PRASMPPPPP PPPLHNIMMV  300
QPSPAVTSGL PMVLDSVPLV NSPTAAAKRV RLFGVNLDNP QPSTGESSQD TDALSLRMPG  360
WQRPGPLRFL ETPQHGGAVA AGAESSAASS PSSSSSSKRE AHSSLDLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-62952043113B3 domain-containing transcription factor NGA1
5os9_B6e-62952043113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G222800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276940.0KJ727694.1 Zea mays clone pUT5633 ABI3VP1 transcription factor (ABI12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976592.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-134Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLK3YC790.0K3YC79_SETIT; Uncharacterized protein
STRINGSi011823m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-63B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]