PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G214100.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 377aa MW: 37405.4 Da PI: 8.4802

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G214100.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	79	140	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Sevir.7G214100.3.p 79 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 140 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	75	137	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	81	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	83	137	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	85	121	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MPTCYFCSLS LGLVKPMEEM LMAANAGAAA ANTGQGSNPN PPAPAPAPSS VPGGGALRAG 60 APPAVAGAGS TERRARPQKE KALNCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG 120 GSLRNVPVGG GSRKNKRSSS SSASASTSAS VTSSSMASTA GAASKNPKLA HEGAQDLNLA 180 FPHHSGLHAP EFGAFPSLES SSVCNSGGAM ASNGRGGGGG GAGPAVGALS AMELLRSSGC 240 YMPLQMPMHM PGDYAAGGFA LGEFRAPPPS QSVLGFSLDA HGPGPGAAAA GYGSSAGLQG 300 VPENAGRLLF PFEDLKPPVS SGGGGVATGA SGGDGDGNSG HPQFDHNKDQ GGGAPSAGHD 360 PPGFWNGMIG GSGASW*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MPTCYFCSLS LGLVKPMEEM LMAANAGAAA ANTGQGSNPN PPAPAPAPSS VPGGGALRAG  60
APPAVAGAGS TERRARPQKE KALNCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG  120
GSLRNVPVGG GSRKNKRSSS SSASASTSAS VTSSSMASTA GAASKNPKLA HEGAQDLNLA  180
FPHHSGLHAP EFGAFPSLES SSVCNSGGAM ASNGRGGGGG GAGPAVGALS AMELLRSSGC  240
YMPLQMPMHM PGDYAAGGFA LGEFRAPPPS QSVLGFSLDA HGPGPGAAAA GYGSSAGLQG  300
VPENAGRLLF PFEDLKPPVS SGGGGVATGA SGGDGDGNSG HPQFDHNKDQ GGGAPSAGHD  360
PPGFWNGMIG GSGASW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G214100.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582413	0.0	KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976522.1	0.0	dof zinc finger protein 1 isoform X1
Swissprot	Q9SXG8	1e-128	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A368RY07	1e-180	A0A368RY07_SETIT; Uncharacterized protein
STRING	Si010443m	1e-175	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Sevir.7G214100.3.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]