PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G214100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 376aa MW: 37327.2 Da PI: 8.4823 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.3e-39 | 78 | 139 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Sevir.7G214100.2.p 78 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 139 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 74 | 136 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 80 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 82 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 84 | 120 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MDAAHWQQSL GLVKPMEEML MAANAGAAAA NTGQGSNPNP PAPAPAPSSV PGGGALRAGA 60 PPAVAGAGST ERRARPQKEK ALNCPRCNST NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG 120 SLRNVPVGGG SRKNKRSSSS SASASTSASV TSSSMASTAG AASKNPKLAH EGAQDLNLAF 180 PHHSGLHAPE FGAFPSLESS SVCNSGGAMA SNGRGGGGGG AGPAVGALSA MELLRSSGCY 240 MPLQMPMHMP GDYAAGGFAL GEFRAPPPSQ SVLGFSLDAH GPGPGAAAAG YGSSAGLQGV 300 PENAGRLLFP FEDLKPPVSS GGGGVATGAS GGDGDGNSGH PQFDHNKDQG GGAPSAGHDP 360 PGFWNGMIGG SGASW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G214100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976523.1 | 0.0 | dof zinc finger protein 1 isoform X2 | ||||
Swissprot | Q9SXG8 | 1e-135 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | A0A368RY15 | 0.0 | A0A368RY15_SETIT; Uncharacterized protein | ||||
STRING | Si010443m | 1e-175 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-42 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G214100.2.p |
Publications ? help Back to Top | |||
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