PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G214100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 390aa MW: 38650.7 Da PI: 9.0823

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G214100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	92	153	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Sevir.7G214100.1.p 92 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 153 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	88	150	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	94	150	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	96	150	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	98	134	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MCSRSSSGST TATHNPTRAQ TKSLGLVKPM EEMLMAANAG AAAANTGQGS NPNPPAPAPA 60 PSSVPGGGAL RAGAPPAVAG AGSTERRARP QKEKALNCPR CNSTNTKFCY YNNYSLQQPR 120 YFCKTCRRYW TEGGSLRNVP VGGGSRKNKR SSSSSASAST SASVTSSSMA STAGAASKNP 180 KLAHEGAQDL NLAFPHHSGL HAPEFGAFPS LESSSVCNSG GAMASNGRGG GGGGAGPAVG 240 ALSAMELLRS SGCYMPLQMP MHMPGDYAAG GFALGEFRAP PPSQSVLGFS LDAHGPGPGA 300 AAAGYGSSAG LQGVPENAGR LLFPFEDLKP PVSSGGGGVA TGASGGDGDG NSGHPQFDHN 360 KDQGGGAPSA GHDPPGFWNG MIGGSGASW*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MCSRSSSGST TATHNPTRAQ TKSLGLVKPM EEMLMAANAG AAAANTGQGS NPNPPAPAPA  60
PSSVPGGGAL RAGAPPAVAG AGSTERRARP QKEKALNCPR CNSTNTKFCY YNNYSLQQPR  120
YFCKTCRRYW TEGGSLRNVP VGGGSRKNKR SSSSSASAST SASVTSSSMA STAGAASKNP  180
KLAHEGAQDL NLAFPHHSGL HAPEFGAFPS LESSSVCNSG GAMASNGRGG GGGGAGPAVG  240
ALSAMELLRS SGCYMPLQMP MHMPGDYAAG GFALGEFRAP PPSQSVLGFS LDAHGPGPGA  300
AAAGYGSSAG LQGVPENAGR LLFPFEDLKP PVSSGGGGVA TGASGGDGDG NSGHPQFDHN  360
KDQGGGAPSA GHDPPGFWNG MIGGSGASW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G214100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582413	0.0	KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976522.1	0.0	dof zinc finger protein 1 isoform X1
Swissprot	Q9SXG8	1e-129	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A368RY07	0.0	A0A368RY07_SETIT; Uncharacterized protein
STRING	Si010443m	1e-176	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Sevir.7G214100.1.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]