PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G211600.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 271aa MW: 30972.4 Da PI: 8.057

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G211600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.8	1.6e-26	129	178	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l ++++yF+lpi++A+k+L++++++LKr+CR+yGI+RWPhRkiksl Sevir.7G211600.2.p 129 DSITLVEIAQYFHLPIREASKTLKIGVSILKRKCRKYGIPRWPHRKIKSL 178 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.577	113	198	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-21	130	178	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MAGWRGRPVF REGQTVGTWR CIVAFDSVAA VKPSSPPPPV LSPLVNPQLE CLPNLYKDLQ 60 KVFQFQKVEK VPRRVLRDAK EQPIHSGEQE KTSDEADSSG SDSDGDTQSD KELAPSVQKQ 120 PRANRKHIDS ITLVEIAQYF HLPIREASKT LKIGVSILKR KCRKYGIPRW PHRKIKSLDS 180 LIQDLEYVLE DDPEEDGQQE LLQMEEEKQA AAIKALTKRK KMLESEKETL QQKPALDLMT 240 ETKQFRDDVF KRRYRAKSAA IDMEMEMETE *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G211600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976506.1	0.0	protein RKD5
TrEMBL	A0A368RXP8	0.0	A0A368RXP8_SETIT; Uncharacterized protein
STRING	Si010837m	1e-135	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-36	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sevir.7G211600.2.p