PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G207100.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 540aa    MW: 58659.3 Da    PI: 8.4306
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G207100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.71.9e-26201662127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atg 87 
                         p+GfrF+Pt +elv +yL +k+ ++++  ++++ e+d y+++P+ L k  ++++ +++wyf s+r+++y+ g+r++r t+  +g+Wk +tg
  Sevir.7G207100.3.p  20 PVGFRFKPTLQELVEFYLLPKLLDNPTVPNDAVIEADAYECDPEILTKryEARGADENWYFLSPRSRRYPGGDRPTRRTAdnRGRWKpSTG 110
                         89************************87779999************86235555788*****************999655459****8899 PP

                 NAM  88 kdkevlsk.....kgel.............vglkktLvfykgrapkgektdWvmheyr 127
                         ++k+ +++     k  +               + +tL++y g+ ++ +kt+W+mhe +
  Sevir.7G207100.3.p 111 QSKPGKDAaaghsK--AkkvlkknlsvgayEFTENTLAYYVGDPRNETKTKWLMHELT 166
                         99998887766541..1456777888777788999*********************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-3117201IPR003441NAC domain
PROSITE profilePS5100533.26219201IPR003441NAC domain
PfamPF023653.9E-1620166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MEAAEETPSG GGDDEKVKYP VGFRFKPTLQ ELVEFYLLPK LLDNPTVPND AVIEADAYEC  60
DPEILTKRYE ARGADENWYF LSPRSRRYPG GDRPTRRTAD NRGRWKPSTG QSKPGKDAAA  120
GHSKAKKVLK KNLSVGAYEF TENTLAYYVG DPRNETKTKW LMHELTVPDP EKEKDLDSPT  180
AEKPRDHMLL NKYVMCRIYK SPLKKWKELE NEEGGTSSAS ACDEEVPTSS QSGPAPEGSG  240
EASALTPLSS KCAGKRPAAE QPTSEQANAP NKRASQHTMR APPVGVGAAG YYDYRSVPAQ  300
LPPLMQWPPA IYSSMQGPVK MQRRPPLMNA HNGQPPVQGP PVLKLYPPHR AAATVPNSLG  360
RTVMMRPPNL AAGPPVRPPS FPRPPPPQQQ QMEDMMMRQQ RVYAQLLAEM KLQKAPQERA  420
PCAGQQQIMP AASTQPACFD EGANHPAGTK VMVPCTQFPA PHNFYPCSGV QQKLQQSSPA  480
IPAASVPPGD PAPAADDAPG NKLPMQGDAN EGSGNGDCSD YRKQPFADFA AGLAAAKNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-162020018164NO APICAL MERISTEM PROTEIN
1ut4_B2e-162020018164NO APICAL MERISTEM PROTEIN
1ut7_A2e-162020018164NO APICAL MERISTEM PROTEIN
1ut7_B2e-162020018164NO APICAL MERISTEM PROTEIN
4dul_A2e-162020018164NAC domain-containing protein 19
4dul_B2e-162020018164NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G207100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976470.10.0protein CUP-SHAPED COTYLEDON 1 isoform X1
TrEMBLA0A368RXS00.0A0A368RXS0_SETIT; Uncharacterized protein
STRINGSi010053m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.13e-23NAC domain containing protein 57