PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G207100.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 597aa    MW: 65193.1 Da    PI: 8.6929
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G207100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.42.2e-26772232127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atg 87 
                         p+GfrF+Pt +elv +yL +k+ ++++  ++++ e+d y+++P+ L k  ++++ +++wyf s+r+++y+ g+r++r t+  +g+Wk +tg
  Sevir.7G207100.2.p  77 PVGFRFKPTLQELVEFYLLPKLLDNPTVPNDAVIEADAYECDPEILTKryEARGADENWYFLSPRSRRYPGGDRPTRRTAdnRGRWKpSTG 167
                         89************************87779999************86235555788*****************999655459****8899 PP

                 NAM  88 kdkevlsk.....kgel.............vglkktLvfykgrapkgektdWvmheyr 127
                         ++k+ +++     k  +               + +tL++y g+ ++ +kt+W+mhe +
  Sevir.7G207100.2.p 168 QSKPGKDAaaghsK--AkkvlkknlsvgayEFTENTLAYYVGDPRNETKTKWLMHELT 223
                         99998887766541..1456777888777788999*********************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3174258IPR003441NAC domain
PROSITE profilePS5100533.26276258IPR003441NAC domain
PfamPF023654.7E-1677223IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MRIMLELLFV SKSGWLTIEK FMVLRPNKDS DVSILPSSIF LAIINLETSR VTRRVADMEA  60
AEETPSGGGD DEKVKYPVGF RFKPTLQELV EFYLLPKLLD NPTVPNDAVI EADAYECDPE  120
ILTKRYEARG ADENWYFLSP RSRRYPGGDR PTRRTADNRG RWKPSTGQSK PGKDAAAGHS  180
KAKKVLKKNL SVGAYEFTEN TLAYYVGDPR NETKTKWLMH ELTVPDPEKE KDLDSPTAEK  240
PRDHMLLNKY VMCRIYKSPL KKWKELENEE GGTSSASACD EEVPTSSQSG PAPEGSGEAS  300
ALTPLSSKCA GKRPAAEQPT SEQANAPNKR ASQHTMRAPP VGVGAAGYYD YRSVPAQLPP  360
LMQWPPAIYS SMQGPVKMQR RPPLMNAHNG QPPVQGPPVL KLYPPHRAAA TVPNSLGRTV  420
MMRPPNLAAG PPVRPPSFPR PPPPQQQQME DMMMRQQRVY AQLLAEMKLQ KAPQERAPCA  480
GQQQIMPAAS TQPACFDEGA NHPAGTKVMV PCTQFPAPHN FYPCSGVQQK LQQSSPAIPA  540
ASVPPGDPAP AADDAPGNKL PMQGDANEGS GNGDCSDYRK QPFADFAAGL AAAKNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-167725718164NO APICAL MERISTEM PROTEIN
1ut4_B2e-167725718164NO APICAL MERISTEM PROTEIN
1ut7_A2e-167725718164NO APICAL MERISTEM PROTEIN
1ut7_B2e-167725718164NO APICAL MERISTEM PROTEIN
3swm_A3e-167725721167NAC domain-containing protein 19
3swm_B3e-167725721167NAC domain-containing protein 19
3swm_C3e-167725721167NAC domain-containing protein 19
3swm_D3e-167725721167NAC domain-containing protein 19
3swp_A3e-167725721167NAC domain-containing protein 19
3swp_B3e-167725721167NAC domain-containing protein 19
3swp_C3e-167725721167NAC domain-containing protein 19
3swp_D3e-167725721167NAC domain-containing protein 19
4dul_A2e-167725718164NAC domain-containing protein 19
4dul_B2e-167725718164NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G207100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976470.10.0protein CUP-SHAPED COTYLEDON 1 isoform X1
RefseqXP_004976471.10.0protein CUP-SHAPED COTYLEDON 1 isoform X2
RefseqXP_022684034.10.0protein CUP-SHAPED COTYLEDON 1 isoform X2
TrEMBLA0A368RXS00.0A0A368RXS0_SETIT; Uncharacterized protein
STRINGSi010053m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-23NAC domain containing protein 32