PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G207100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 603aa MW: 65940 Da PI: 8.8162 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.4 | 2.3e-26 | 83 | 229 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atg 87 p+GfrF+Pt +elv +yL +k+ ++++ ++++ e+d y+++P+ L k ++++ +++wyf s+r+++y+ g+r++r t+ +g+Wk +tg Sevir.7G207100.1.p 83 PVGFRFKPTLQELVEFYLLPKLLDNPTVPNDAVIEADAYECDPEILTKryEARGADENWYFLSPRSRRYPGGDRPTRRTAdnRGRWKpSTG 173 89************************87779999************86235555788*****************999655459****8899 PP NAM 88 kdkevlsk.....kgel.............vglkktLvfykgrapkgektdWvmheyr 127 ++k+ +++ k + + +tL++y g+ ++ +kt+W+mhe + Sevir.7G207100.1.p 174 QSKPGKDAaaghsK--AkkvlkknlsvgayEFTENTLAYYVGDPRNETKTKWLMHELT 229 99998887766541..1456777888777788999*********************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-31 | 80 | 264 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.262 | 82 | 264 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-16 | 83 | 229 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MMKEARMRIM LELLFVSKSG WLTIEKFMVL RPNKDSDVSI LPSSIFLAII NLETSRVTRR 60 VADMEAAEET PSGGGDDEKV KYPVGFRFKP TLQELVEFYL LPKLLDNPTV PNDAVIEADA 120 YECDPEILTK RYEARGADEN WYFLSPRSRR YPGGDRPTRR TADNRGRWKP STGQSKPGKD 180 AAAGHSKAKK VLKKNLSVGA YEFTENTLAY YVGDPRNETK TKWLMHELTV PDPEKEKDLD 240 SPTAEKPRDH MLLNKYVMCR IYKSPLKKWK ELENEEGGTS SASACDEEVP TSSQSGPAPE 300 GSGEASALTP LSSKCAGKRP AAEQPTSEQA NAPNKRASQH TMRAPPVGVG AAGYYDYRSV 360 PAQLPPLMQW PPAIYSSMQG PVKMQRRPPL MNAHNGQPPV QGPPVLKLYP PHRAAATVPN 420 SLGRTVMMRP PNLAAGPPVR PPSFPRPPPP QQQQMEDMMM RQQRVYAQLL AEMKLQKAPQ 480 ERAPCAGQQQ IMPAASTQPA CFDEGANHPA GTKVMVPCTQ FPAPHNFYPC SGVQQKLQQS 540 SPAIPAASVP PGDPAPAADD APGNKLPMQG DANEGSGNGD CSDYRKQPFA DFAAGLAAAK 600 NF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-16 | 83 | 263 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-16 | 83 | 263 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-16 | 83 | 263 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-16 | 83 | 263 | 18 | 164 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-16 | 83 | 263 | 18 | 164 | NAC domain-containing protein 19 |
4dul_B | 2e-16 | 83 | 263 | 18 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G207100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976470.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 isoform X1 | ||||
TrEMBL | A0A368RXS0 | 0.0 | A0A368RXS0_SETIT; Uncharacterized protein | ||||
STRING | Si010053m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19368 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 2e-23 | NAC domain containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G207100.1.p |