PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G201200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 231aa    MW: 24162.5 Da    PI: 5.3051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G201200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.4e-185099255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Sevir.7G201200.1.p 50 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 99
                        69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-3250108IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2150108IPR016177DNA-binding domain
PROSITE profilePS5103222.91950107IPR001471AP2/ERF domain
SMARTSM003801.1E-3650113IPR001471AP2/ERF domain
PfamPF008472.0E-125099IPR001471AP2/ERF domain
PRINTSPR003671.0E-105162IPR001471AP2/ERF domain
CDDcd000187.77E-3051109No hitNo description
PRINTSPR003671.0E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDTDDTHEPA SPTSASSSSS SSSASSSSQA QAQAQAPKKR ARKDGSRHPT YRGVRMRSWG  60
KWVSEIREPR KKSRIWLGTF ATAEMAARAH DVAALAIKGR GAHLNFPEHA HLLPRPASAS  120
PKDVQAAATL AAAADFPPPP PPSSSSADAG ANAKSPESSS SDDASAAASP PHEATPQDAE  180
PDPDDALFDL PDLLLDLRCC GPSSWAVDDD MAVSAGGAFR LIEEPLLWEY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1841112577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G201200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653061e-127EU965306.1 Zea mays clone 285154 dehydration-responsive element-binding protein 1C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976435.11e-102ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ71e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A368RX961e-101A0A368RX96_SETIT; Uncharacterized protein
TrEMBLK3YDE91e-101K3YDE9_SETIT; Uncharacterized protein
STRINGSi012254m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.13e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]