PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G201100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 246aa    MW: 26287.3 Da    PI: 4.5949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G201100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-1854103255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f+ +e+Aa+a++aa+ +++g
  Sevir.7G201100.1.p  54 TYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFDNPEMAARAHDAAAVAIKG 103
                         69****998.**********843...6**********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-2154112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3154112IPR001471AP2/ERF domain
PfamPF008471.7E-1154102IPR001471AP2/ERF domain
SMARTSM003808.3E-3654117IPR001471AP2/ERF domain
PROSITE profilePS5103222.33954111IPR001471AP2/ERF domain
PRINTSPR003676.4E-105566IPR001471AP2/ERF domain
CDDcd000184.86E-2055113No hitNo description
PRINTSPR003676.4E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEHEQVLPQV SVGGCTCSDN SSSITSLNAS SPSSSDDSGS KGTKRPRRDL KHPTYRGVRM  60
RTWGKWVSEI REPRKKSRIW LGTFDNPEMA ARAHDAAAVA IKGRAAHLNF PELAHELPRA  120
ASAAPKDVQA AAALAAATLL PASSSSPVVV PSYEDDDAGD AGTVPDQVVE QHDDQAAARC  180
FGIENAAPLC GGTGLDLAFL DVPDAPLDFG YMLSPLPLPP SYWGSQWDEI ADELCFEEPL  240
LLWEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1737111272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G201100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278641e-134KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976434.11e-179ethylene-responsive transcription factor ERF039
TrEMBLK3YEM31e-178K3YEM3_SETIT; Uncharacterized protein
STRINGSi012688m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-30ERF family protein