PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G199300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 344aa MW: 36187.5 Da PI: 4.5772 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.2e-20 | 148 | 199 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t+ eAa+a+++a+ +++g+ Sevir.7G199300.1.p 148 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 199 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 147 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.105 | 148 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.05E-30 | 148 | 207 | No hit | No description |
Pfam | PF00847 | 2.4E-14 | 148 | 198 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-37 | 148 | 212 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 148 | 207 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-13 | 149 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-13 | 188 | 208 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MAFAGDADGF ALDFIREHLL GGGCGGVAAV DSPVDSDDVD VTIPVLPAEP EFEPTSFLPL 60 EQEQHHGYMG MDLTHEYMGC GAPAVGEAAA AFPEQEPAAP VIIKFGSQSS SPVRPPLTIA 120 VPPTSYAWAA TASAAAPAVA EAVEDYRKYR GVRQRPWGKY AAEIRDPKRR GSRVWLGTYD 180 TPVEAARAYD RAAFRMRGAK AILNFPNEVG TRGADLWAPP PAPAAKAATA ANKRKRQQPE 240 DTDDVEVVAV VNKAVKVEVP SSSSTQVSSS TTSPSSMSTR ETTASSTVTS PETTEAGAGA 300 EWLPVTPSSG SWEQYWEALL GGLPPLSPLS PIPTLGFPQL PVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-26 | 147 | 211 | 4 | 68 | ATERF1 |
3gcc_A | 5e-26 | 147 | 211 | 4 | 68 | ATERF1 |
5wx9_A | 9e-26 | 148 | 208 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G199300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727525 | 1e-109 | KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976417.1 | 0.0 | ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A368RYZ3 | 0.0 | A0A368RYZ3_SETIT; Uncharacterized protein | ||||
STRING | Si011648m | 1e-158 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 3e-33 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G199300.1.p |