PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G199200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 341aa    MW: 36333.7 Da    PI: 4.7311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G199200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19146197256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ +Aa+a+++a+ +++g+
  Sevir.7G199200.1.p 146 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVDAARAYDRAAFRMRGA 197
                         8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-32145205IPR001471AP2/ERF domain
PfamPF008471.4E-13146196IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22146205IPR016177DNA-binding domain
CDDcd000182.22E-19146205No hitNo description
SMARTSM003804.8E-36146210IPR001471AP2/ERF domain
PROSITE profilePS5103223.933146204IPR001471AP2/ERF domain
PRINTSPR003671.8E-13147158IPR001471AP2/ERF domain
PRINTSPR003671.8E-13186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDFVGDSDDF AIDFIREHLF DGGYGGVPVD STGVPDDVTF PVLQPQPEFQ PMSSFLPPPP  60
PPQQGYVDLT HEYMGPAPAP AAAAPAFRAQ ELSAAVMIKF GSEPSSPVRL PLTITVPPSS  120
YAWAESVTAP VPAAAATAAF DDDFRKYRGV RQRPWGKYAA EIRDPKRRGS RVWLGTYDTP  180
VDAARAYDRA AFRMRGAKAI LNFPNEIGTR GADLWTPPPP PPPAATQAAL ANKRKRQKEE  240
SDVEVLAVVN KAVKIETASS SSAQVSTTSP SSMSTGDTTA TASSTVTATT TEEAPGAEWL  300
PATPSSESWE QYWEALLGGL PPLSPRSPHP ALGFPQLTVN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26145209468ATERF1
3gcc_A2e-26145209468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G199200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275256e-91KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825916.11e-144ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3L6PS241e-145A0A3L6PS24_PANMI; Uncharacterized protein
STRINGPavir.J21804.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-23ERF family protein