PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G199000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 332aa    MW: 35341.9 Da    PI: 5.4279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G199000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19144195256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ +Aa+a+++a+ +++g+
  Sevir.7G199000.1.p 144 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVDAARAYDRAAFRMRGA 195
                         8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-32143203IPR001471AP2/ERF domain
SMARTSM003807.5E-37144208IPR001471AP2/ERF domain
PROSITE profilePS5103223.933144202IPR001471AP2/ERF domain
PfamPF008471.3E-13144194IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22144203IPR016177DNA-binding domain
CDDcd000189.80E-20144203No hitNo description
PRINTSPR003671.7E-13145156IPR001471AP2/ERF domain
PRINTSPR003671.7E-13184204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MNMDFVGDAD GFALDFIRDL LLGGDGRGAP VASPVVSDDV TFPVLQPQPE LQPMSSSFFP  60
PPQQHPGYID LMHEYMGSVP AAPAVGEAAF RAQEPPPPVM IKFGSEPPSP VRPPLIISVP  120
PSSYAWAGTA SAAAPAAAVE DYRKYRGVRQ RPWGKYAAEI RDPKRRGSRV WLGTYDTPVD  180
AARAYDRAAF RMRGAKAILN FPNEVGTRGA DLWAPPSPPA PVKQAATTAN KRKRQQPEDT  240
DDDVEVVAVV NKAVKLEVSS TSPSSMSTRE TTASSTVTST TTETGAGVQG LPVTPSSGSW  300
EQYWEALLGG LPPLSPLSPH PTLGFPQLIV N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-27143207468ATERF1
3gcc_A8e-27143207468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G199000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275256e-97KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956405.10.0ethylene-responsive transcription factor ERF105
TrEMBLK4A0G20.0K4A0G2_SETIT; Uncharacterized protein
STRINGSi032351m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-23ethylene responsive element binding factor 5