PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G197100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 547aa    MW: 59785.1 Da    PI: 6.9669
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G197100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.2e-16741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Sevir.7G197100.1.p  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                        ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.85E-11546No hitNo description
CDDcd002023.81E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.4E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.4E-9273367IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR KDYIDDNEPR  60
VSKLKPPTSK SKSQKKKPNH IIMDNGPFSC QNFQKMGDAD PSNRSSSESA VSYSESCGPY  120
GAADASEMTG SAQSHAWEFL VPSRKRSCVT RPKPSPVEML AKDLSSIMHE EQLYYLSGSS  180
EEDLLYHSET PVGSFEIGSG SVLLRHPNSK SPEEESEASS IPADNKSYIT SESYSGSASF  240
VVHSGNRAAI NLNPATARLK RSPLHIEDNA RRDKLPYENK HILESIDSPL VSVDLEDVVN  300
YSNFVKYLTK EDQQQLFKLL SPAESSTPDS SVRSMFDSIQ FSDAIDSYQM LLGEGILDPS  360
FSGDEGWNTV KMLALTNLTR CKWLECYKQQ KEKEIKAIGG VENISGSKGS TKFTMKPLKR  420
SRDTHIQSET ELEGTMRTPK RVLKSGDLAS QFKSSSMLKS GYATKGSTCT GGALSLFMLP  480
PEKLSLLVPP QYGNGDSDQD LLLDIPLNAR HAEAELLCQP SQLSSITHSS TSVDGVAGGE  540
GCLKQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G197100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424870.0BT042487.1 Zea mays full-length cDNA clone ZM_BFb0296I21 mRNA, complete cds.
GenBankEU9621170.0EU962117.1 Zea mays clone 240325 GATA transcription factor 29 mRNA, complete cds.
GenBankKJ7268460.0KJ726846.1 Zea mays clone pUT3386 C2C2-GATA transcription factor (GATA5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699094.10.0uncharacterized protein LOC101755887
TrEMBLA0A368Q0420.0A0A368Q042_SETIT; Uncharacterized protein
STRINGSi029600m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-89GATA transcription factor 26