PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G194500.9.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 528aa    MW: 56870 Da    PI: 5.3234
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G194500.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix109.42.2e-34274359187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r +++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea
  Sevir.7G194500.9.p 274 RWPKTEVHALIQLRMDLDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 359
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.2E-4271333IPR001005SANT/Myb domain
PROSITE profilePS500907.352273331IPR017877Myb-like domain
PfamPF138377.4E-24273360No hitNo description
CDDcd122031.58E-29274338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MSSMPPPPPG PMQPAPISSA GPAPVPAAAP MELPPAQQPL NLQGLSFSSM SDSESDDESE  60
DDDMTAETGG SQDHLGKRKR GGGAGGSKKM MSFFEGLMQQ VVQRQEEMQH RFLETMEKRE  120
AERTAREEAW RRQEVARLNR EQEQLAQERA AAASRDAAII NFLQRIGGQS VQPPAAVAIP  180
MPVQTPPPPK QPPRQPQHPP PPSPQATTPQ SKPISAAPLQ QQPQETAAHR DAGTPRSAPP  240
TSSASLELAP PVTTEQHVDS GLGGGDGGAA SSSRWPKTEV HALIQLRMDL DMRYQETGPK  300
GPLWEEISSG MRRLGYNRSS KRCKEKWENI NKYYKKVKES NKKRPEDSKT CPYFHQLEAI  360
YNRKHLRSIG AASASSVAIA GAPPALPAEQ ANPTRQELEG KNINDDKRNN GGSGAGAQEP  420
NSNGEKAPAP PAAFDADSGM KKPEDIVREL NEQPPREFTT DETDSDEMGD EYTDGEEGED  480
DGKMQYRIQF QRPNSGGTNS APPAPAPTTA AAPATSAPTS TFLAVVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G194500.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550330.0BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344790.10.0uncharacterized LOC100279868 isoform 2
TrEMBLA0A0Q3NW250.0A0A0Q3NW25_SETIT; Uncharacterized protein
TrEMBLA0A3L6PWB50.0A0A3L6PWB5_PANMI; Uncharacterized protein
STRINGPavir.Ga00673.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-37Trihelix family protein