PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G194500.10.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 449aa MW: 48261.8 Da PI: 8.6371

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G194500.10.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	109.8	1.7e-34	274	359	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r +++ r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea Sevir.7G194500.10.p 274 RWPKTEVHALIQLRMDLDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 359 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	8.2E-4	271	333	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.352	273	331	IPR017877	Myb-like domain
Pfam	PF13837	5.7E-24	273	360	No hit	No description
CDD	cd12203	2.08E-29	274	338	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MSSMPPPPPG PMQPAPISSA GPAPVPAAAP MELPPAQQPL NLQGLSFSSM SDSESDDESE 60 DDDMTAETGG SQDHLGKRKR GGGAGGSKKM MSFFEGLMQQ VVQRQEEMQH RFLETMEKRE 120 AERTAREEAW RRQEVARLNR EQEQLAQERA AAASRDAAII NFLQRIGGQS VQPPAAVAIP 180 MPVQTPPPPK QPPRQPQHPP PPSPQATTPQ SKPISAAPLQ QQPQETAAHR DAGTPRSAPP 240 TSSASLELAP PVTTEQHVDS GLGGGDGGAA SSSRWPKTEV HALIQLRMDL DMRYQETGPK 300 GPLWEEISSG MRRLGYNRSS KRCKEKWENI NKYYKKVKES NKKRPEDSKT CPYFHQLEAI 360 YNRKHLRSIG AASASSVAIA GAPPALPAEQ ANPTRQELEG KNINDDKRNN GGSGAGAQEP 420 NSNGEKAPAP PAAFDADSGM KKKTSSGS*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MSSMPPPPPG PMQPAPISSA GPAPVPAAAP MELPPAQQPL NLQGLSFSSM SDSESDDESE  60
DDDMTAETGG SQDHLGKRKR GGGAGGSKKM MSFFEGLMQQ VVQRQEEMQH RFLETMEKRE  120
AERTAREEAW RRQEVARLNR EQEQLAQERA AAASRDAAII NFLQRIGGQS VQPPAAVAIP  180
MPVQTPPPPK QPPRQPQHPP PPSPQATTPQ SKPISAAPLQ QQPQETAAHR DAGTPRSAPP  240
TSSASLELAP PVTTEQHVDS GLGGGDGGAA SSSRWPKTEV HALIQLRMDL DMRYQETGPK  300
GPLWEEISSG MRRLGYNRSS KRCKEKWENI NKYYKKVKES NKKRPEDSKT CPYFHQLEAI  360
YNRKHLRSIG AASASSVAIA GAPPALPAEQ ANPTRQELEG KNINDDKRNN GGSGAGAQEP  420
NSNGEKAPAP PAAFDADSGM KKKTSSGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G194500.10.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146293.2	1e-175	uncharacterized LOC100279868 isoform 1
TrEMBL	A0A3L6PWB5	1e-178	A0A3L6PWB5_PANMI; Uncharacterized protein
STRING	Pavir.Ga00673.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-38	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sevir.7G194500.10.p