PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G191100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | YABBY | ||||||||
Protein Properties | Length: 240aa MW: 25156.8 Da PI: 7.6439 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 159.4 | 2.8e-49 | 25 | 211 | 5 | 159 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa.eshldeslkee........................ 70 eq+Cyv+C+ C+tilav vP +slfk+vtvrCGhC++llsvnl+ +aa +++l ++++ Sevir.7G191100.2.p 25 AEQEQLCYVHCKCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPTAAaNNQLPFGGQQQallsptsphglldemmpfqqapsl 115 6789*******************************************99976655055555555555888999999*87777777665543 PP YABBY 71 .lleelkveeenlksnvekeesastsvssekl..................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrik 141 + ++ + st +s ++ + ++ ++p+ +r ekrqrvPsaynrfik+eiqrik Sevir.7G191100.2.p 116 tS-------------AEPASACVSTITSINNScggrnnasamsmappplkPAPQEPQLPKSAAsGNRTAEKRQRVPSAYNRFIKDEIQRIK 193 21.............22222222222222222223333333344677667677777888876658************************** PP YABBY 142 asnPdishreafsaaakn 159 asnPdi+hreafsaaakn Sevir.7G191100.2.p 194 ASNPDITHREAFSAAAKN 211 *****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-57 | 26 | 211 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.04E-5 | 168 | 209 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 5.51E-4 | 176 | 203 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MMSSVPEAAF AMDQHLAPPQ LQTAAEQEQL CYVHCKCCDT ILAVGVPCSS LFKTVTVRCG 60 HCANLLSVNL RGLLLPTAAA NNQLPFGGQQ QALLSPTSPH GLLDEMMPFQ QAPSLTSAEP 120 ASACVSTITS INNSCGGRNN ASAMSMAPPP LKPAPQEPQL PKSAASGNRT AEKRQRVPSA 180 YNRFIKDEIQ RIKASNPDIT HREAFSAAAK NEGGECMLFK DGLYAAAAAA ASSMGIAPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G191100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976365.1 | 1e-165 | protein YABBY 5 | ||||
Swissprot | Q01JG2 | 3e-94 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 3e-94 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | K3Y9G7 | 1e-163 | K3Y9G7_SETIT; Uncharacterized protein | ||||
STRING | Si010859m | 1e-164 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 4e-36 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G191100.2.p |
Publications ? help Back to Top | |||
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