PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G189500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 337aa MW: 35787.3 Da PI: 8.7016 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 54 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd+llvd v+ G+g+W+ ++ g++R++k+c++rw +yl Sevir.7G189500.1.p 54 KGPWAPEEDKLLVDFVQANGPGNWRMLPKLAGLNRCGKSCRLRWTNYL 101 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.4e-17 | 107 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ +v++++ G++ W+ Ia+ ++ gRt++++k++w+++l Sevir.7G189500.1.p 107 RGPFTPEEHNSIVQLHAVVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 152 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.256 | 49 | 101 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-30 | 51 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 53 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 54 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 55 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.22E-9 | 56 | 101 | No hit | No description |
PROSITE profile | PS51294 | 27.326 | 102 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-15 | 106 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 107 | 152 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-27 | 109 | 156 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-10 | 109 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MATAPPPPPL TPRSRRRRCR RHRGRTESDR RRSAAAAAAS MGRTPCCDSK GIKKGPWAPE 60 EDKLLVDFVQ ANGPGNWRML PKLAGLNRCG KSCRLRWTNY LRPDIKRGPF TPEEHNSIVQ 120 LHAVVGNKWS MIAAQLPGRT DNEIKNYWNT HLKKQLRQEA LAGADAAAAQ QLALSAAAAS 180 PCPAARHMAQ WETARLEAEA RLSLLSSSAA TTLTSAAAAA AAAAASSSSS TAAEHAAPDI 240 FLRLWNSEVG ESFRGTAHGP AEAGAPALLP APRGGDDSSA ASTNGTEAAD DYHAFLELAV 300 EEFALLHGRL GGAFSEFTPV DVHVLAEASC LFTPFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 54 | 156 | 7 | 108 | B-MYB |
1mse_C | 2e-27 | 54 | 156 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 54 | 156 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G189500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108621 | 1e-118 | AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008669097.2 | 1e-140 | transcription factor MYB41 | ||||
Swissprot | Q9M2D9 | 5e-81 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A368RX34 | 1e-172 | A0A368RX34_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Gb00736.1.p | 1e-140 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5409 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 4e-66 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G189500.1.p |