PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G186000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 454aa    MW: 47935.8 Da    PI: 9.6239
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G186000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18213263256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++ + kl+ge
  Sevir.7G186000.1.p 213 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAMAYDREAFKLRGE 263
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-31212271No hitNo description
PROSITE profilePS5103222.787213270IPR001471AP2/ERF domain
SMARTSM003804.7E-37213276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-31213271IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23213272IPR016177DNA-binding domain
PRINTSPR003673.1E-10214225IPR001471AP2/ERF domain
PfamPF008477.2E-12214263IPR001471AP2/ERF domain
PRINTSPR003673.1E-10236252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDASSASGES GGGGGAGGGR GGRRWKGKGG VTPIQPRRQL APVMEDASAA SLRPHKKIGR  60
APDRFQRSAS SLSTTASSSA PPSPRASAAS PTPAESSPPS ARRIFPFAYE PSAPPVGGAP  120
RLQLPPWQHS SASQPASPQQ APLQRQQMIS FGAPPQFQAQ FFLPDGSPQH QQQHLLRYWS  180
EALNLSPRGG QAAAVLPSLY QHLVRAPPPP QKLYRGVRQR HWGKWVAEIR LPRNRTRLWL  240
GTFDSAEDAA MAYDREAFKL RGENARLNFP DRFFGKGHAG GSGRTSATSA AAPTTAAGSG  300
SSSSSSPPQT PDEASTQQTP PPHAEGSSDK QPQPPVATSW QQDVSSKTMP VSGEMIHAPV  360
AHGSEWGPAD EAWFNAWGPG SSFWDYDMDS NPGLFLHGRF AGDEATMEHS TAQETTAAAA  420
AGTDMSCDHV PVTPASSSSP LHSQSPHSPS FMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19212272465ATERF1
3gcc_A2e-19212272465ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G186000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703079.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A368RWY70.0A0A368RWY7_SETIT; Uncharacterized protein
STRINGSi012169m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.16e-38ERF family protein