PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G179200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 714aa    MW: 76546.5 Da    PI: 7.4707
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G179200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.5e-23152253199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +s  +  +d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF  
  Sevir.7G179200.1.p 152 FAKTLTQSDANNGGGFSVPRFCAETIfpeldyrARPPVQS--VYARDVHGVEWSFRHIYRGTPRRHLLTTGWSNFVNKKRLLAGDSVVFV- 239
                         89*********************999****9986666675..************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++ +++ +v+++r+
  Sevir.7G179200.1.p 240 -REANGRIHVGLRRA 253
                         .4578889***9996 PP
2Auxin_resp113.91.5e-37302385183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+ +++Fevv++Prast+eF+v+++ v+++++v++++GmRfkmafetedss++++ +Gt++gv+++dp+rWp+S+Wr+L+
  Sevir.7G179200.1.p 302 AARLAAAGQPFEVVHYPRASTPEFCVRAAAVRASMQVPWCPGMRFKMAFETEDSSRISWfMGTIAGVKAADPTRWPQSPWRLLQ 385
                         678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-29142254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-35144255IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-20151252No hitNo description
PROSITE profilePS5086312.774152254IPR003340B3 DNA binding domain
SMARTSM010197.2E-21152254IPR003340B3 DNA binding domain
PfamPF023622.2E-20152253IPR003340B3 DNA binding domain
PfamPF065072.4E-32302385IPR010525Auxin response factor
PROSITE profilePS5174516.36626704IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MSAAACAPTR LGMLTFAERM PPPPPPPQPE QLEEEVMIDG GAAAEGGVSP QLWLASAGSM  60
CTVPPVGAAV YYFPQGHAEQ ASAAVDLPAA AVPPFVPCRV AAVRFMAEPH TDEVYARIRL  120
VPLRSGEPVV DVGDAAAAGG DQQPQQPNQA SFAKTLTQSD ANNGGGFSVP RFCAETIFPE  180
LDYRARPPVQ SVYARDVHGV EWSFRHIYRG TPRRHLLTTG WSNFVNKKRL LAGDSVVFVR  240
EANGRIHVGL RRAKRGFGAG AGGDDGFAGW GDAFGALQVR GNAGGGARYP GGKVPPEDVV  300
AAARLAAAGQ PFEVVHYPRA STPEFCVRAA AVRASMQVPW CPGMRFKMAF ETEDSSRISW  360
FMGTIAGVKA ADPTRWPQSP WRLLQVAWDE PELLQNVKRV CPWLVEQVSS MPNLHLPSFT  420
PRKKPRIPEF PLEGQPLFDP GFPPAAHPLP PLAPHPRPHH DQNPHPHALV PLFPFPDGSA  480
AAGIQGARHA QFAPFFSDLH VGNLQQGLLF CGFRPADHHT TPPAPRISTD LAIGIPPPPR  540
QDAPRSPPSA ASKKADDDVK PARIMLFGRA ILTEEQMNCN SPTSPGATGE GAPKPDRDAE  600
KGPNTPDGSG SGVTEGSPTK NNLWEPGQCK VFVKSDSVGR NLDLSALGTF DELYARLAAM  660
FRFDNADLRS HVLYRTATGE EKHVGDEPFS AFVKSVRRIT IRSDAGSDST GSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-762840630388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G179200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978138.40.0auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLK3Y5Q20.0K3Y5Q2_SETIT; Auxin response factor
STRINGSi009541m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-169auxin response factor 16