PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G175600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 279aa MW: 30568.2 Da PI: 5.6874

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G175600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.5	1.6e-50	10	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF P+deelv++yL kkv++++ ++ evd++ ePw+Lp ++k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+e Sevir.7G175600.1.p 10 LPPGFRFYPSDEELVCHYLYKKVANERAAQ-GTLVEVDLHAREPWELPDAAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRE 99 79***********************776.78***********87788899******************************* PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 v s ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl Sevir.7G175600.1.p 100 VRSPapSRSVVGMRKTLVFYQGRAPNGVKSCWVMHEFRL 138 99888899***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-59	8	157	IPR003441	NAC domain
PROSITE profile	PS51005	58	10	157	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	11	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGLREVESTL PPGFRFYPSD EELVCHYLYK KVANERAAQG TLVEVDLHAR EPWELPDAAK 60 LTASEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDREV RSPAPSRSVV GMRKTLVFYQ 120 GRAPNGVKSC WVMHEFRLDS PHTPPKEDWV LCRVFQKRKD SEQDNAAGSS SPTFAGSSSQ 180 AAALPDDPPM MDAYVVDQTG SSAGFAPPQE NVVGGFDPLM WQYNSVLGHF PQEVTSSPMM 240 GMGLGSGGVG DGCGLFYDTG FDDTANIGGM GFPQGWMG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-51	1	163	1	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G175600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU966431	0.0	EU966431.1 Zea mays clone 294479 NAC domain-containing protein 21/22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976221.1	0.0	NAC domain-containing protein 21/22
Swissprot	Q84TE6	2e-62	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	K3Y9A7	0.0	K3Y9A7_SETIT; Uncharacterized protein
STRING	Si010799m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	3e-79	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Sevir.7G175600.1.p

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]