PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G170100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 355aa MW: 39311.2 Da PI: 9.169

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G170100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	23.5	1.5e-07	56	170	7	126
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk.kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 F+P ++lv +yL ++ + + +l i+++d+y + +P L k + a+++ ew fF++r + nr ++ g + + k+ Sevir.7G170100.1.p 56 FDPAPDDLVGRYLPARRALRCGDLPPQIHDADVYGAhHPALLAKvHPPANDRpEWLFFVCRGRGLG----GNRRARPGAYRLASEAKPRG- 141 9**********99988777777667**97638999973233334446***998654....45545567777776655544. PP NAM 95 kkgelvglkktLvfy..kgrapkgektdWvmhey 126 + +++ ++ + +a+ +++t+W m+ey Sevir.7G170100.1.p 142 -----AWYCHSFRYHedSVEASAARETEWRMDEY 170 .....5888994445889999******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	12.035	50	189	IPR003441	NAC domain
SuperFamily	SSF101941	3.66E-14	55	187	IPR003441	NAC domain
Pfam	PF02365	7.9E-6	56	170	IPR003441	NAC domain
PROSITE profile	PS51005	9.028	206	354	IPR003441	NAC domain
SuperFamily	SSF101941	4.71E-14	217	338	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MQKAASCPAP SAAGLREEET DDGWQRHGGR AGAGGRPPRP PRRGGNRPPG GQPPPFDPAP 60 DDLVGRYLPA RRALRCGDLP PQIHDADVYG AHHPALLAKV HPPANDRPEW LFFVCRGRGL 120 GGNRRARPGA YRLASEAKPR GAWYCHSFRY HEDSVEASAA RETEWRMDEY GDRGAGGAFD 180 VVVCKLYPAR GGALHKRLLL RLDGAGPREG ADDVRPQVLV QLYLASLGVG DPLRCRMHHA 240 ADVCAAHPAV LTSVLPAAND RFEWFFVARR PRAEHGDDGN GIARPRRAVP GQYVPAARYW 300 SVKDGEGREL GYRRLFRYRE DEEVHGDDEE LVVYKVYLRM DGSRTLDSCW RGRR*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MQKAASCPAP SAAGLREEET DDGWQRHGGR AGAGGRPPRP PRRGGNRPPG GQPPPFDPAP  60
DDLVGRYLPA RRALRCGDLP PQIHDADVYG AHHPALLAKV HPPANDRPEW LFFVCRGRGL  120
GGNRRARPGA YRLASEAKPR GAWYCHSFRY HEDSVEASAA RETEWRMDEY GDRGAGGAFD  180
VVVCKLYPAR GGALHKRLLL RLDGAGPREG ADDVRPQVLV QLYLASLGVG DPLRCRMHHA  240
ADVCAAHPAV LTSVLPAAND RFEWFFVARR PRAEHGDDGN GIARPRRAVP GQYVPAARYW  300
SVKDGEGREL GYRRLFRYRE DEEVHGDDEE LVVYKVYLRM DGSRTLDSCW RGRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G170100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825360.1	1e-158	uncharacterized protein LOC112900773
TrEMBL	K3YBS1	0.0	K3YBS1_SETIT; Uncharacterized protein
STRING	Si011665m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14767	18	19

Link Out ? help Back to Top
Phytozome	Sevir.7G170100.1.p