PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G161700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 327aa    MW: 34467.5 Da    PI: 4.9501
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G161700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.45.8e-082056437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        r C+ ++ + ++l+C+ +  +lC+ C    H g    H
  Sevir.7G161700.1.p 20 RPCDACGGEAARLYCRADAAFLCAGCDARAH-GagsrH 56
                        68*************************9999.435667 PP
2zf-B_box23.51.1e-0759103341
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                          + C+ +e+ ++   C+ +   lC++C   +H+       H++ p
  Sevir.7G161700.1.p  59 VWLCEVCEHAPAVVTCRADAAALCASCDADIHSAnplarrHERLP 103
                         679*****************************6688888898877 PP
3CCT68.91.4e-23238281144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Sevir.7G161700.1.p 238 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 281
                         9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-81761IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4241761IPR000315B-box-type zinc finger
PfamPF006433.4E-62057IPR000315B-box-type zinc finger
CDDcd000217.83E-92061No hitNo description
PROSITE profilePS5011910.39557104IPR000315B-box-type zinc finger
PfamPF006435.9E-659104IPR000315B-box-type zinc finger
CDDcd000217.98E-960104No hitNo description
SMARTSM003362.2E-962104IPR000315B-box-type zinc finger
PfamPF062039.2E-18238280IPR010402CCT domain
PROSITE profilePS5101716.876238280IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEGDEKSAVG APAYWGLGAR PCDACGGEAA RLYCRADAAF LCAGCDARAH GAGSRHARVW  60
LCEVCEHAPA VVTCRADAAA LCASCDADIH SANPLARRHE RLPVAPFFGA LADAPKPFAS  120
SAAAMPKVAD DDGSNEAEAA SWLLPEPDLG PKEESATTEV FFADSDPYLD LDFARSMDDI  180
KAIGVQNGPA ELDLTGAKLF YSDHSMNHSV SSSEAAVVPD AAAGAAPVVP VVSRGLEREA  240
RLMRYREKRK SRRFEKTIRY ASRKAYAETR PRIKGRFAKR TAGAGADGEE PLEEHEEEMY  300
SSAAAAVAAL MAPGGADGDY GVVPTY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G161700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279840.0KJ727984.1 Zea mays clone pUT6100 C2C2-CO-like transcription factor (COL7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976103.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLK3Y8Q00.0K3Y8Q0_SETIT; Uncharacterized protein
STRINGSi010592m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.13e-49CONSTANS-like 3