PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G157300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 263aa    MW: 28372.4 Da    PI: 7.558
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G157300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.4e-17741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Sevir.7G157300.1.p  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                        ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-11545No hitNo description
CDDcd002021.94E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.3E-14741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR KDDIDDDEPR  60
VSKLKPPTSK MKSQKKKTNH ITTENGPFSG QSFQKMGDAD PSSRSSSGSA ISYSESCVPY  120
GAVDASEMSG SAQSHAWESL VPSRKRSCAT RLKPSPVEKL VKDLNSIMHE EQLYYLSGSS  180
EEDLLYHSDT PVGSFETGSG SVLLRHPNSK SPEEESEASS IPADDKSHIT SESYSGSTMF  240
VLHSGNKATV NLKAATASPP EY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G157300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424870.0BT042487.1 Zea mays full-length cDNA clone ZM_BFb0296I21 mRNA, complete cds.
GenBankEU9621170.0EU962117.1 Zea mays clone 240325 GATA transcription factor 29 mRNA, complete cds.
GenBankKJ7268460.0KJ726846.1 Zea mays clone pUT3386 C2C2-GATA transcription factor (GATA5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660940.11e-175LOW QUALITY PROTEIN: GATA transcription factor 26-like
SwissprotQ8W4H11e-56GAT26_ARATH; GATA transcription factor 26
TrEMBLK3Y9H10.0K3Y9H1_SETIT; Uncharacterized protein
STRINGSi010863m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.34e-59GATA transcription factor 26