PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G146000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 369aa    MW: 40896.2 Da    PI: 5.8772
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G146000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.64.8e-27572021128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                         lp+G++F+P+d el+ ++L+ k +  +      ++++   i+e  +i++++P+++p  +k + ++ +fF++  ++y  g+rk+r+      
  Sevir.7G146000.2.p  57 LPAGVKFDPSDFELL-QHLEGKSSLLNskshalIDAFIPtIEEKgGICYTHPKNFP-GIKMDGSSFHFFHRVPNAYGCGHRKRRKvsgdvg 145
                         799************.899999766663445443443334777778**********.66778899*******************7677777 PP

                 NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgekt...dWvmheyrl 128
                             ++ +W++tgk k++ + +g ++g k++Lv+y+g+++ g++t   +Wvmh+y+l
  Sevir.7G146000.2.p 146 svcDEHIRWHKTGKPKPIRDDNGVKKGWKEILVLYRGSKRGGSNThidNWVMHQYHL 202
                         76655778*****************************999999885558*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-3142220IPR003441NAC domain
PROSITE profilePS5100525.98857220IPR003441NAC domain
PfamPF023654.7E-1058202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MENSWIMTGV GLIKKIRNAT QSICLRLGEL VAEPYIKCPN CECEIDTSNV HLVWPALPAG  60
VKFDPSDFEL LQHLEGKSSL LNSKSHALID AFIPTIEEKG GICYTHPKNF PGIKMDGSSF  120
HFFHRVPNAY GCGHRKRRKV SGDVGSVCDE HIRWHKTGKP KPIRDDNGVK KGWKEILVLY  180
RGSKRGGSNT HIDNWVMHQY HLDAYEEADG ELVVSKVFYQ LASKKNGKSE MDDIVVESKA  240
SVAKIDHRTP KTDPPQPCFP NNSPCDTEQY TPIQVDQEEE ECGTSFCPVM VKVEPSECSA  300
RLAELSPAVV VADLPASDEP RQPRDTTGAG PEPEAPIPID GSNTDLFHGL PDLDVTFPEL  360
TFRSYQLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G146000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683945.10.0NAC domain-containing protein 10
TrEMBLA0A368RV960.0A0A368RV96_SETIT; Uncharacterized protein
STRINGSi010735m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.14e-63NAC domain containing protein 44