PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G146000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 41414.9 Da PI: 5.8759 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.5 | 4.9e-27 | 62 | 207 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+P+d el+ ++L+ k + + ++++ i+e +i++++P+++p +k + ++ +fF++ ++y g+rk+r+ Sevir.7G146000.1.p 62 LPAGVKFDPSDFELL-QHLEGKSSLLNskshalIDAFIPtIEEKgGICYTHPKNFP-GIKMDGSSFHFFHRVPNAYGCGHRKRRKvsgdvg 150 799************.899999766663445443443334777778**********.66778899*******************7677777 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgekt...dWvmheyrl 128 ++ +W++tgk k++ + +g ++g k++Lv+y+g+++ g++t +Wvmh+y+l Sevir.7G146000.1.p 151 svcDEHIRWHKTGKPKPIRDDNGVKKGWKEILVLYRGSKRGGSNThidNWVMHQYHL 207 76655778*****************************999999885558*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-31 | 47 | 225 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.988 | 62 | 225 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-10 | 63 | 207 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MDVLPFCSSW IMTGVGLIKK IRNATQSICL RLGELVAEPY IKCPNCECEI DTSNVHLVWP 60 ALPAGVKFDP SDFELLQHLE GKSSLLNSKS HALIDAFIPT IEEKGGICYT HPKNFPGIKM 120 DGSSFHFFHR VPNAYGCGHR KRRKVSGDVG SVCDEHIRWH KTGKPKPIRD DNGVKKGWKE 180 ILVLYRGSKR GGSNTHIDNW VMHQYHLDAY EEADGELVVS KVFYQLASKK NGKSEMDDIV 240 VESKASVAKI DHRTPKTDPP QPCFPNNSPC DTEQYTPIQV DQEEEECGTS FCPVMVKVEP 300 SECSARLAEL SPAVVVADLP ASDEPRQPRD TTGAGPEPEA PIPIDGSNTD LFHGLPDLDV 360 TFPELTFRSY QLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G146000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683945.1 | 0.0 | NAC domain-containing protein 10 | ||||
TrEMBL | A0A368RV96 | 0.0 | A0A368RV96_SETIT; Uncharacterized protein | ||||
STRING | Si010735m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 3e-62 | NAC domain containing protein 44 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G146000.1.p |